This document tabulates the correspondences between data items in the structured records of the PDB file format and data items defined in the PDBx/mmCIF dictionary. The PDB records in the following list are linked to tables which provide the mmCIF data item correspondences. The mmCIF data items are linked to their corresponding dictionary definitions.
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Classification | _struct_keywords.pdbx_keywords | |
Initial_Deposition_Date | _database_PDB_rev.date_original | |
Structure_ID | _entry.id |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _pdbx_database_PDB_obs_spr.id | |
Continuation | n.a. | |
Date | _pdbx_database_PDB_obs_spr.date | |
ID_old | _pdbx_database_PDB_obs_spr.replace_pdb_id | |
ID_new | _pdbx_database_PDB_obs_spr.pdb_id |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Title | _struct.title |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
PDB_ID1 | _pdbx_database_related.db_id | |
PDB_ID2 | _pdbx_database_related.db_id | |
PDB_ID3 | _pdbx_database_related.db_id | |
PDB_ID4 | _pdbx_database_related.db_id | |
PDB_ID5 | _pdbx_database_related.db_id | |
PDB_ID6 | _pdbx_database_related.db_id | |
PDB_ID7 | _pdbx_database_related.db_id | |
PDB_ID8 | _pdbx_database_related.db_id | |
PDB_ID9 | _pdbx_database_related.db_id | |
PDB_ID10 | _pdbx_database_related.db_id | |
PDB_ID11 | _pdbx_database_related.db_id | |
PDB_ID12 | _pdbx_database_related.db_id | |
PDB_ID13 | _pdbx_database_related.db_id | |
PDB_ID14 | _pdbx_database_related.db_id |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
PDB_ID | _database_PDB_caveat.id | |
Comment | _database_PDB_caveat.text |
Keyword Name | mmCIF Data Item | |
---|---|---|
MOLECULE | _entity.pdbx_description | |
FRAGMENT | _entity.pdbx_fragment | |
SYNONYM | _entity_name_com.name | |
EC | _entity.pdbx_ec | |
MUTATION | _entity.pdbx_mutation | |
OTHER_DETAILS | _entity.details |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Keywords_PDB | _struct_keywords.text |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Experimental_Technique | _exptl.method |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Details | _struct.pdbx_model_type_details |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Author1 | _audit_author.name |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Revision_Number | _database_PDB_rev.num | |
Continuation | n.a. | |
Revision_Date | _database_PDB_rev.date | |
Revision_ID | _database_PDB_rev.replaces | |
Revision_Type | _database_PDB_rev.mod_type | |
Revision_Record1 | _database_PDB_rev_record.type | |
Revision_Record2 | _database_PDB_rev_record.type | |
Revision_Record3 | _database_PDB_rev_record.type | |
Revision_Record4 | _database_PDB_rev_record.type |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _pdbx_database_PDB_obs_spr.id | |
Continuation | n.a. | |
Date | _pdbx_database_PDB_obs_spr.date | |
ID_new | _pdbx_database_PDB_obs_spr.pdb_id | |
ID_old | _pdbx_database_PDB_obs_spr.replace_pdb_id |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _citation.id | |
AUTH | _citation_author.name | |
EDIT | _citation_editor.name | |
TITL | _citation.title | |
REF | _citation.journal_abbrev | |
REF VOLUME | _citation.journal_volume | |
REF PAGE | _citation.page_first | |
_citation.page_last | ||
REF YEAR | _citation.year | |
REFN ASTM | _citation.journal_id_ASTM | |
REFN ISSN | _citation.journal_id_ISSN | |
REFN ISBN | _citation.book_id_ISBN | |
REFN COUNTRY | _citation.country | |
PMID | _citation.pdbx_database_id_PubMed | |
DOI | _citation.pdbx_database_id_DOI |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : X-PLOR | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
DATA CUTOFF HIGH (ABS(F)) : | _refine.pdbx_data_cutoff_high_absF | |
DATA CUTOFF LOW (ABS(F)) : | _refine.pdbx_data_cutoff_low_absF | |
COMPLETENESS (WORKING+TEST) (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
ESTIMATED ERROR OF FREE R VALUE : | _refine.ls_R_factor_R_free_error | |
FIT IN THE HIGHEST RESOLUTION BIN. | ||
TOTAL NUMBER OF BINS USED : | _refine_ls_shell.pdbx_total_number_of_bins_used | |
BIN RESOLUTION RANGE HIGH (A) : | _refine_ls_shell.d_res_high | |
BIN RESOLUTION RANGE LOW (A) : | _refine_ls_shell.d_res_low | |
BIN COMPLETENESS (WORKING+TEST) (%) : | _refine_ls_shell.percent_reflns_obs | |
REFLECTIONS IN BIN (WORKING SET) : | _refine_ls_shell.number_reflns_R_work | |
BIN R VALUE (WORKING SET) : | _refine_ls_shell.R_factor_R_work | |
BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free | |
BIN FREE R VALUE TEST SET SIZE (%) : | _refine_ls_shell.percent_reflns_R_free | |
BIN FREE R VALUE TEST SET COUNT : | _refine_ls_shell.number_reflns_R_free | |
ESTIMATED ERROR OF BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free_error | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED COORDINATE ERROR. | ||
ESD FROM LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_obs | |
ESD FROM SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_obs | |
LOW RESOLUTION CUTOFF (A) : | _refine_analyze.Luzzati_d_res_low_obs | |
CROSS-VALIDATED ESTIMATED COORDINATE ERROR. | ||
ESD FROM C-V LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_free | |
ESD FROM C-V SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_free | |
RMS DEVIATIONS FROM IDEAL VALUES. | _refine_ls_restr.dev_ideal | |
BOND LENGTHS (A) : | x_bond_d | |
BOND ANGLES (DEGREES) : | x_angle_deg | |
DIHEDRAL ANGLES (DEGREES) : | x_dihedral_angle_d | |
IMPROPER ANGLES (DEGREES) : | x_improper_angle_d | |
ISOTROPIC THERMAL MODEL : | _refine.pdbx_isotropic_thermal_model | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
MAIN-CHAIN BOND (A**2) : | x_mcbond_it | |
MAIN-CHAIN ANGLE (A**2) : | x_mcangle_it | |
SIDE-CHAIN BOND (A**2) : | x_scbond_it | |
SIDE-CHAIN ANGLE (A**2) : | x_scangle_it | |
NCS MODEL : | _refine_ls_restr_ncs.ncs_model_details | |
NCS RESTRAINTS. RMS SIGMA/WEIGHT | ||
GROUP POSITIONAL (A) : | _refine_ls_restr_ncs.dom_id | - and/or - |
_refine_ls_restr_ncs.rms_dev_position | - and/or - | |
_refine_ls_restr_ncs.weight_position | ||
GROUP B-FACTOR (A**2) : | _refine_ls_restr_ncs.dom_id | - and/or - |
_refine_ls_restr_ncs.rms_dev_B_iso | - and/or - | |
_refine_ls_restr_ncs.weight_B_iso | ||
PARAMETER FILE : | _pdbx_xplor_file.serial_no | - and/or - |
_pdbx_xplor_file.param_file | ||
TOPOLOGY FILE : | _pdbx_xplor_file.serial_no | - and/or - |
_pdbx_xplor_file.topol_file | ||
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : CNS | _software.name | |
AUTHORS : | ||
REFINEMENT TARGET : | _refine.pdbx_stereochemistry_target_values | |
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
DATA CUTOFF HIGH (ABS(F)) : | _refine.pdbx_data_cutoff_high_absF | |
DATA CUTOFF LOW (ABS(F)) : | _refine.pdbx_data_cutoff_low_absF | |
COMPLETENESS (WORKING+TEST) (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
ESTIMATED ERROR OF FREE R VALUE : | _refine.ls_R_factor_R_free_error | |
FIT IN THE HIGHEST RESOLUTION BIN. | ||
TOTAL NUMBER OF BINS USED : | _refine_ls_shell.pdbx_total_number_of_bins_used | |
BIN RESOLUTION RANGE HIGH (A) : | _refine_ls_shell.d_res_high | |
BIN RESOLUTION RANGE LOW (A) : | _refine_ls_shell.d_res_low | |
BIN COMPLETENESS (WORKING+TEST) (%) : | _refine_ls_shell.percent_reflns_obs | |
REFLECTIONS IN BIN (WORKING SET) : | _refine_ls_shell.number_reflns_R_work | |
BIN R VALUE (WORKING SET) : | _refine_ls_shell.R_factor_R_work | |
BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free | |
BIN FREE R VALUE TEST SET SIZE (%) : | _refine_ls_shell.percent_reflns_R_free | |
BIN FREE R VALUE TEST SET COUNT : | _refine_ls_shell.number_reflns_R_free | |
ESTIMATED ERROR OF BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free_error | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED COORDINATE ERROR. | ||
ESD FROM LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_obs | |
ESD FROM SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_obs | |
LOW RESOLUTION CUTOFF (A) : | _refine_analyze.Luzzati_d_res_low_obs | |
CROSS-VALIDATED ESTIMATED COORDINATE ERROR. | ||
ESD FROM C-V LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_free | |
ESD FROM C-V SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_free | |
RMS DEVIATIONS FROM IDEAL VALUES. | _refine_ls_restr.dev_ideal | |
BOND LENGTHS (A) : | c_bond_d | |
BOND ANGLES (DEGREES) : | c_angle_deg | |
DIHEDRAL ANGLES (DEGREES) : | c_dihedral_angle_d | |
IMPROPER ANGLES (DEGREES) : | c_improper_angle_d | |
ISOTROPIC THERMAL MODEL : | _refine.pdbx_isotropic_thermal_model | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
MAIN-CHAIN BOND (A**2) : | c_mcbond_it | |
MAIN-CHAIN ANGLE (A**2) : | c_mcangle_it | |
SIDE-CHAIN BOND (A**2) : | c_scbond_it | |
SIDE-CHAIN ANGLE (A**2) : | c_scangle_it | |
BULK SOLVENT MODELING. | ||
METHOD USED : | _refine.solvent_model_details | |
KSOL : | _refine.solvent_model_param_ksol | |
BSOL : | _refine.solvent_model_param_bsol | |
NCS MODEL : | _refine_ls_restr_ncs.ncs_model_details | |
NCS RESTRAINTS. RMS SIGMA/WEIGHT | ||
GROUP POSITIONAL (A) : | _refine_ls_restr_ncs.dom_id | - and/or - |
_refine_ls_restr_ncs.rms_dev_position | - and/or - | |
_refine_ls_restr_ncs.weight_position | ||
GROUP B-FACTOR (A**2) : | _refine_ls_restr_ncs.dom_id | - and/or - |
_refine_ls_restr_ncs.rms_dev_B_iso | - and/or - | |
_refine_ls_restr_ncs.weight_B_iso | ||
PARAMETER FILE : | _pdbx_xplor_file.serial_no | - and/or - |
_pdbx_xplor_file.param_file | ||
TOPOLOGY FILE : | _pdbx_xplor_file.serial_no | - and/or - |
_pdbx_xplor_file.topol_file | ||
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : CNX | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
DATA CUTOFF HIGH (ABS(F)) : | _refine.pdbx_data_cutoff_high_absF | |
DATA CUTOFF LOW (ABS(F)) : | _refine.pdbx_data_cutoff_low_absF | |
COMPLETENESS (WORKING+TEST) (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
ESTIMATED ERROR OF FREE R VALUE : | _refine.ls_R_factor_R_free_error | |
FIT/AGREEMENT OF MODEL WITH ALL DATA. | ||
R VALUE (WORKING + TEST SET, NO CUTOFF) : | _pdbx_refine.R_factor_all_no_cutoff | |
R VALUE (WORKING SET, NO CUTOFF) : | _pdbx_refine.R_factor_obs_no_cutoff | |
FREE R VALUE (NO CUTOFF) : | _pdbx_refine.free_R_factor_no_cutoff | |
FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff | |
FREE R VALUE TEST SET COUNT (NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_ct_no_cutoff | |
ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : | _pdbx_refine.free_R_error_no_cutoff | |
TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : | _refine.ls_number_reflns_all | |
FIT IN THE HIGHEST RESOLUTION BIN. | ||
TOTAL NUMBER OF BINS USED : | _refine_ls_shell.pdbx_total_number_of_bins_used | |
BIN RESOLUTION RANGE HIGH (A) : | _refine_ls_shell.d_res_high | |
BIN RESOLUTION RANGE LOW (A) : | _refine_ls_shell.d_res_low | |
BIN COMPLETENESS (WORKING+TEST) (%) : | _refine_ls_shell.percent_reflns_obs | |
REFLECTIONS IN BIN (WORKING SET) : | _refine_ls_shell.number_reflns_R_work | |
BIN R VALUE (WORKING SET) : | _refine_ls_shell.R_factor_R_work | |
BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free | |
BIN FREE R VALUE TEST SET SIZE (%) : | _refine_ls_shell.percent_reflns_R_free | |
BIN FREE R VALUE TEST SET COUNT : | _refine_ls_shell.number_reflns_R_free | |
ESTIMATED ERROR OF BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free_error | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED COORDINATE ERROR. | ||
ESD FROM LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_obs | |
ESD FROM SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_obs | |
LOW RESOLUTION CUTOFF (A) : | _refine_analyze.Luzzati_d_res_low_obs | |
CROSS-VALIDATED ESTIMATED COORDINATE ERROR. | ||
ESD FROM C-V LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_free | |
ESD FROM C-V SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_free | |
RMS DEVIATIONS FROM IDEAL VALUES. | _refine_ls_restr.dev_ideal | |
BOND LENGTHS (A) : | c_bond_d | |
BOND ANGLES (DEGREES) : | c_angle_deg | |
DIHEDRAL ANGLES (DEGREES) : | c_dihedral_angle_d | |
IMPROPER ANGLES (DEGREES) : | c_improper_angle_d | |
ISOTROPIC THERMAL MODEL : | _refine.pdbx_isotropic_thermal_model | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
MAIN-CHAIN BOND (A**2) : | c_mcbond_it | |
MAIN-CHAIN ANGLE (A**2) : | c_mcangle_it | |
SIDE-CHAIN BOND (A**2) : | c_scbond_it | |
SIDE-CHAIN ANGLE (A**2) : | c_scangle_it | |
BULK SOLVENT MODELING. | ||
METHOD USED : | _refine.solvent_model_details | |
KSOL : | _refine.solvent_model_param_ksol | |
BSOL : | _refine.solvent_model_param_bsol | |
NCS MODEL : | _refine_ls_restr_ncs.ncs_model_details | |
NCS RESTRAINTS. RMS SIGMA/WEIGHT | ||
GROUP POSITIONAL (A) : | _refine_ls_restr_ncs.dom_id | - and/or - |
_refine_ls_restr_ncs.rms_dev_position | - and/or - | |
_refine_ls_restr_ncs.weight_position | ||
GROUP B-FACTOR (A**2) : | _refine_ls_restr_ncs.dom_id | - and/or - |
_refine_ls_restr_ncs.rms_dev_B_iso | - and/or - | |
_refine_ls_restr_ncs.weight_B_iso | ||
PARAMETER FILE : | _pdbx_xplor_file.serial_no | - and/or - |
_pdbx_xplor_file.param_file | ||
TOPOLOGY FILE : | _pdbx_xplor_file.serial_no | - and/or - |
_pdbx_xplor_file.topol_file | ||
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : NUCLSQ | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
FIT/AGREEMENT OF MODEL WITH ALL DATA. | ||
R VALUE (WORKING + TEST SET, NO CUTOFF) : | _pdbx_refine.R_factor_all_no_cutoff | |
R VALUE (WORKING SET, NO CUTOFF) : | _pdbx_refine.R_factor_obs_no_cutoff | |
FREE R VALUE (NO CUTOFF) : | _pdbx_refine.free_R_factor_no_cutoff | |
FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff | |
FREE R VALUE TEST SET COUNT (NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_ct_no_cutoff | |
TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : | _refine.ls_number_reflns_all | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED COORDINATE ERROR. | ||
ESD FROM LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_obs | |
ESD FROM SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_obs | |
LOW RESOLUTION CUTOFF (A) : | _refine_analyze.Luzzati_d_res_low_obs | |
RMS DEVIATIONS FROM IDEAL VALUES. | ||
DISTANCE RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SUGAR-BASE BOND DISTANCE (A) : | n_sugar_bond_d | |
SUGAR-BASE BOND ANGLE DISTANCE (A) : | n_sugar_bond_angle_d | |
PHOSPHATE BONDS DISTANCE (A) : | n_phos_bond_d | |
PHOSPHATE BOND ANGLE, H-BOND (A) : | n_phos_bond_angle_d | |
PLANE RESTRAINT (A) : | n_plane_restr | |
CHIRAL-CENTER RESTRAINT (A**3) : | n_chiral_restr | |
NON-BONDED CONTACT RESTRAINTS. | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SINGLE TORSION CONTACT (A) : | n_singtor_nbd | |
MULTIPLE TORSION CONTACT (A) : | n_multtor_nbd | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SUGAR-BASE BONDS (A**2) : | n_sugar_bond_it | |
SUGAR-BASE ANGLES (A**2) : | n_sugar_angle_it | |
PHOSPHATE BONDS (A**2) : | n_phos_bond_it | |
PHOSPHATE BOND ANGLE, H-BOND (A**2) : | n_phos_angle_it | |
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : PROLSQ | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
FIT/AGREEMENT OF MODEL WITH ALL DATA. | ||
R VALUE (WORKING + TEST SET, NO CUTOFF) : | _pdbx_refine.R_factor_all_no_cutoff | |
R VALUE (WORKING SET, NO CUTOFF) : | _pdbx_refine.R_factor_obs_no_cutoff | |
FREE R VALUE (NO CUTOFF) : | _pdbx_refine.free_R_factor_no_cutoff | |
FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff | |
FREE R VALUE TEST SET COUNT (NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_ct_no_cutoff | |
TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : | _refine.ls_number_reflns_all | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED COORDINATE ERROR. | ||
ESD FROM LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_obs | |
ESD FROM SIGMAA (A) : | _refine_analyze.Luzzati_sigma_a_obs | |
LOW RESOLUTION CUTOFF (A) : | _refine_analyze.Luzzati_d_res_low_obs | |
RMS DEVIATIONS FROM IDEAL VALUES. | ||
DISTANCE RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
BOND LENGTH (A) : | p_bond_d | |
ANGLE DISTANCE (A) : | p_angle_d | |
INTRAPLANAR 1-4 DISTANCE (A) : | p_planar_d | |
H-BOND OR METAL COORDINATION (A) : | p_hb_or_metal_coord | |
PLANE RESTRAINT (A) : | p_plane_restr | |
CHIRAL-CENTER RESTRAINT (A**3) : | p_chiral_restr | |
NON-BONDED CONTACT RESTRAINTS. | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SINGLE TORSION (A) : | p_singtor_nbd | |
MULTIPLE TORSION (A) : | p_multtor_nbd | |
H-BOND (X...Y) (A) : | p_xyhbond_nbd | |
H-BOND (X-H...Y) (A) : | p_xhyhbond_nbd | |
CONFORMATIONAL TORSION ANGLE RESTRAINTS. | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SPECIFIED (DEGREES) : | p_special_tor | |
PLANAR (DEGREES) : | p_planar_tor | |
STAGGERED (DEGREES) : | p_staggered_tor | |
TRANSVERSE (DEGREES) : | p_transverse_tor | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
MAIN-CHAIN BOND (A**2) : | p_mcbond_it | |
MAIN-CHAIN ANGLE (A**2) : | p_mcangle_it | |
SIDE-CHAIN BOND (A**2) : | p_scbond_it | |
SIDE-CHAIN ANGLE (A**2) : | p_scangle_it | |
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : REFMAC | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED OVERALL COORDINATE ERROR. | ||
ESU BASED ON R VALUE (A): | _refine.pdbx_overall_ESU_R | |
ESU BASED ON FREE R VALUE (A): | _refine.pdbx_overall_ESU_R_Free | |
ESU BASED ON MAXIMUM LIKELIHOOD (A): | _refine.overall_SU_ML | |
ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): | _refine.overall_SU_B | |
RMS DEVIATIONS FROM IDEAL VALUES. | ||
DISTANCE RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
BOND LENGTH (A) : | p_bond_d | |
ANGLE DISTANCE (A) : | p_angle_d | |
INTRAPLANAR 1-4 DISTANCE (A) : | p_planar_d | |
H-BOND OR METAL COORDINATION (A) : | p_hb_or_metal_coord | |
PLANE RESTRAINT (A) : | p_plane_restr | |
CHIRAL-CENTER RESTRAINT (A**3) : | p_chiral_restr | |
NON-BONDED CONTACT RESTRAINTS. | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SINGLE TORSION (A) : | p_singtor_nbd | |
MULTIPLE TORSION (A) : | p_multtor_nbd | |
H-BOND (X...Y) (A) : | p_xyhbond_nbd | |
H-BOND (X-H...Y) (A) : | p_xhyhbond_nbd | |
CONFORMATIONAL TORSION ANGLE RESTRAINTS. | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
SPECIFIED (DEGREES) : | p_special_tor | |
PLANAR (DEGREES) : | p_planar_tor | |
STAGGERED (DEGREES) : | p_staggered_tor | |
TRANSVERSE (DEGREES) : | p_transverse_tor | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.dev_ideal_target | ||
MAIN-CHAIN BOND (A**2) : | p_mcbond_it | |
MAIN-CHAIN ANGLE (A**2) : | p_mcangle_it | |
SIDE-CHAIN BOND (A**2) : | p_scbond_it | |
SIDE-CHAIN ANGLE (A**2) : | p_scangle_it | |
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : REFMAC 5.XXX | _software.name | |
AUTHORS : | ||
REFINEMENT TARGET : | _refine.pdbx_stereochemistry_target_values | |
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
FIT IN THE HIGHEST RESOLUTION BIN. | ||
TOTAL NUMBER OF BINS USED : | _refine_ls_shell.pdbx_total_number_of_bins_used | |
BIN RESOLUTION RANGE HIGH (A) : | _refine_ls_shell.d_res_high | |
BIN RESOLUTION RANGE LOW (A) : | _refine_ls_shell.d_res_low | |
REFLECTION IN BIN (WORKING SET) : | _refine_ls_shell.number_reflns_R_work | |
BIN COMPLETENESS (WORKING+TEST) (%) : | _refine_ls_shell.percent_reflns_obs | |
BIN R VALUE (WORKING SET) : | _refine_ls_shell.R_factor_R_work | |
BIN FREE R VALUE SET COUNT : | _refine_ls_shell.number_reflns_R_free | |
BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED OVERALL COORDINATE ERROR. | ||
ESU BASED ON R VALUE (A): | _refine.pdbx_overall_ESU_R | |
ESU BASED ON FREE R VALUE (A): | _refine.pdbx_overall_ESU_R_Free | |
ESU BASED ON MAXIMUM LIKELIHOOD (A): | _refine.overall_SU_ML | |
ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): | _refine.overall_SU_B | |
CORRELATION COEFFICIENTS. | ||
CORRELATION COEFFICIENT FO-FC : | _refine.correlation_coeff_Fo_to_Fc | |
CORRELATION COEFFICIENT FO-FC FREE : | _refine.correlation_coeff_Fo_to_Fc_free | |
RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT | _refine_ls_restr.number | - and/or - |
_refine_ls_restr.dev_ideal | - and/or - | |
_refine_ls_restr.weight | ||
BOND LENGTHS REFINED ATOMS (A): | r_bond_refined_d | |
BOND LENGTHS OTHERS (A): | r_bond_other_d | |
BOND ANGLES REFINED ATOMS (DEGREES): | r_angle_refined_deg | |
BOND ANGLES OTHERS (DEGREES): | r_angle_other_deg | |
TORSION ANGLES, PERIOD 1 (DEGREES): | r_dihedral_angle_1_deg | |
TORSION ANGLES, PERIOD 2 (DEGREES): | r_dihedral_angle_2_deg | |
TORSION ANGLES, PERIOD 3 (DEGREES): | r_dihedral_angle_3_deg | |
TORSION ANGLES, PERIOD 4 (DEGREES): | r_dihedral_angle_4_deg | |
CHIRAL-CENTER RESTRAINTS (A**3): | r_chiral_restr | |
GENERAL PLANES REFINED ATOMS (A): | r_gen_planes_refined | |
GENERAL PLANES OTHERS (A): | r_gen_planes_other | |
NON-BONDED CONTACTS REFINED ATOMS (A): | r_nbd_refined | |
NON-BONDED CONTACTS OTHERS (A): | r_nbd_other | |
NON-BONDED TORSION REFINED ATOMS (A): | r_nbtor_refined | |
NON-BONDED TORSION OTHERS (A): | r_nbtor_other | |
H-BOND (X...Y) REFINED ATOMS (A): | r_xyhbond_nbd_refined | |
H-BOND (X...Y) OTHERS (A): | r_xyhbond_nbd_other | |
POTENTIAL METAL-ION REFINED ATOMS (A): | r_metal_ion_refined | |
POTENTIAL METAL-ION OTHERS (A): | r_metal_ion_other | |
SYMMETRY VDW REFINED ATOMS (A): | r_symmetry_vdw_refined | |
SYMMETRY VDW OTHERS (A): | r_symmetry_vdw_other | |
SYMMETRY H-BOND REFINED ATOMS (A): | r_symmetry_hbond_refined | |
SYMMETRY H-BOND OTHERS (A): | r_symmetry_hbond_other | |
SYMMETRY METAL-ION REFINED ATOMS (A): | r_symmetry_metal_ion_refined | |
SYMMETRY METAL-ION OTHERS (A): | r_symmetry_metal_ion_other | |
ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT | _refine_ls_restr.number | - and/or - |
_refine_ls_restr.dev_ideal | - and/or - | |
_refine_ls_restr.weight | ||
MAIN-CHAIN BOND REFINED ATOMS (A**2): | r_mcbond_it | |
MAIN-CHAIN BOND OTHER ATOMS (A**2): | r_mcbond_other | |
MAIN-CHAIN ANGLE REFINED ATOMS (A**2): | r_mcangle_it | |
MAIN-CHAIN ANGLE OTHER ATOMS (A**2): | r_mcangle_other | |
SIDE-CHAIN BOND REFINED ATOMS (A**2): | r_scbond_it | |
SIDE-CHAIN BOND OTHER ATOMS (A**2): | r_scbond_other | |
SIDE-CHAIN ANGLE REFINED ATOMS (A**2): | r_scangle_it | |
SIDE-CHAIN ANGLE OTHER ATOMS (A**2): | r_scangle_other | |
LONG RANGE B REFINED ATOMS (A**2): | r_long_range_B_refined | |
LONG RANGE B OTHER ATOMS (A**2): | r_long_range_B_other | |
ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT | _refine_ls_restr.number | - and/or - |
_refine_ls_restr.dev_ideal | - and/or - | |
_refine_ls_restr.weight | ||
RIGID-BOND RESTRAINTS (A**2): | r_rigid_bond_restr | |
SPHERICITY; FREE ATOMS (A**2): | r_sphericity_free | |
SPHERICITY; BONDED ATOMS (A**2): | r_sphericity_bonded | |
NCS RESTRAINTS STATISTICS | ||
NUMBER OF DIFFERENT NCS GROUPS : | ||
NCS GROUP NUMBER : | _struct_ncs_dom.pdbx_ens_id | |
CHAIN NAMES : | _struct_ncs_dom.details | |
NUMBER OF COMPONENTS NCS GROUP : | _struct_ncs_dom_lim.dom_id | |
COMPONENT C SSSEQI TO C SSSEQI CODE | ||
_struct_ncs_dom_lim.pdbx_component_id | - and/or - | |
_struct_ncs_dom_lim.beg_auth_asym_id | - and/or - | |
_struct_ncs_dom_lim.beg_auth_seq_id | - and/or - | |
_struct_ncs_dom_lim.end_auth_asym_id | - and/or - | |
_struct_ncs_dom_lim.end_auth_seq_id | - and/or - | |
_struct_ncs_dom_lim.pdbx_refine_code | ||
GROUP CHAIN COUNT RMS WEIGHT | _refine_ls_restr_ncs.pdbx_type | - and/or - |
_refine_ls_restr_ncs.dom_id | - and/or - | |
_refine_ls_restr_ncs.pdbx_auth_asym_id | - and/or - | |
_refine_ls_restr_ncs.pdbx_number | - and/or - | |
_refine_ls_restr_ncs.rms_dev_position | - and/or - | |
_refine_ls_restr_ncs.weight_position | ||
TIGHT POSITIONAL (A): | tight positional | |
MEDIUM POSITIONAL (A): | medium positional | |
LOOSE POSITIONAL (A): | loose positional | |
TIGHT THERMAL (A**2): | tight thermal | |
MEDIUM THERMAL (A**2): | medium thermal | |
LOOSE THERMAL (A**2): | loose thermal | |
TWIN DETAILS | ||
NUMBER OF TWIN DOMAINS : | ||
TLS DETAILS | ||
NUMBER OF TLS GROUPS : | ||
TLS GROUP : | _pdbx_refine_tls.id | |
NUMBER OF COMPONENTS GROUP : | ||
COMPONENTS C SSSEQI TO C SSSEQI | ||
RESIDUE RANGE : | _pdbx_refine_tls_group.beg_auth_asym_id | - and/or - |
_pdbx_refine_tls_group.beg_auth_seq_id | - and/or - | |
_pdbx_refine_tls_group.end_auth_asym_id | - and/or - | |
_pdbx_refine_tls_group.end_auth_seq_id | ||
ORIGIN FOR THE GROUP (A): | _pdbx_refine_tls.origin_x | - and/or - |
_pdbx_refine_tls.origin_y | - and/or - | |
_pdbx_refine_tls.origin_z | ||
T TENSOR | ||
T11: T22: | _pdbx_refine_tls.T[1][1] | - and/or - |
_pdbx_refine_tls.T[2][2] | ||
T33: T12: | _pdbx_refine_tls.T[3][3] | - and/or - |
_pdbx_refine_tls.T[1][2] | ||
T13: T23: | _pdbx_refine_tls.T[1][3] | - and/or - |
_pdbx_refine_tls.T[2][3] | ||
L TENSOR | ||
L11: L22: | _pdbx_refine_tls.L[1][1] | - and/or - |
_pdbx_refine_tls.L[2][2] | ||
L33: L12: | _pdbx_refine_tls.L[3][3] | - and/or - |
_pdbx_refine_tls.L[1][2] | ||
L13: L23: | _pdbx_refine_tls.L[1][3] | - and/or - |
_pdbx_refine_tls.L[2][3] | ||
S TENSOR | ||
S11: S12: S13: | _pdbx_refine_tls.S[1][1] | - and/or - |
_pdbx_refine_tls.S[1][2] | - and/or - | |
_pdbx_refine_tls.S[1][3] | ||
S21: S22: S23: | _pdbx_refine_tls.S[2][1] | - and/or - |
_pdbx_refine_tls.S[2][2] | - and/or - | |
_pdbx_refine_tls.S[2][3] | ||
S31: S32: S33: | _pdbx_refine_tls.S[3][1] | - and/or - |
_pdbx_refine_tls.S[3][2] | - and/or - | |
_pdbx_refine_tls.S[3][3] | ||
BULK SOLVENT MODELLING. | ||
METHOD USED : | _refine.solvent_model_details | |
PARAMETERS FOR MASK CALCULATION | ||
VDW PROBE RADIUS : | _refine.pdbx_solvent_vdw_probe_radii | |
ION PROBE RADIUS : | _refine.pdbx_solvent_ion_probe_radii | |
SHRINKAGE RADIUS : | _refine.pdbx_solvent_shrinkage_radii | |
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : PHENIX | _software.name | |
AUTHORS : | ||
REFINEMENT TARGET : | _refine.pdbx_stereochemistry_target_values | |
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
MIN(FOBS/SIGMA_FOBS) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
FIT TO DATA USED IN REFINEMENT (IN BINS). | ||
BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE | ||
BULK SOLVENT MODELLING. | ||
METHOD USED : | _refine.solvent_model_details | |
SOLVENT RADIUS : | _refine.pdbx_solvent_vdw_probe_radii | |
SHRINKAGE RADIUS : | _refine.pdbx_solvent_shrinkage_radii | |
K_SOL : | _refine.solvent_model_param_ksol | |
B_SOL : | _refine.solvent_model_param_bsol | |
ERROR ESTIMATES. | ||
COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : | _refine.overall_SU_ML | |
PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : | _refine.pdbx_overall_phase_error | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
TWINNING INFORMATION. | ||
FRACTION: | _pdbx_reflns_twin.fraction | |
OPERATOR: | _pdbx_reflns_twin.operator | |
DEVIATIONS FROM IDEAL VALUES. | ||
RMSD COUNT | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.number | ||
BOND : | f_bond_d | |
ANGLE : | f_angle_d | |
CHIRALITY : | f_chiral_restr | |
PLANARITY : | f_plane_restr | |
DIHEDRAL : | f_dihedral_angle_d | |
TLS DETAILS | ||
NUMBER OF TLS GROUPS : | ||
TLS GROUP : | _pdbx_refine_tls.id | |
SELECTION: | _pdbx_refine_tls_group.selection_details | |
ORIGIN FOR THE GROUP (A): | _pdbx_refine_tls.origin_x | - and/or - |
_pdbx_refine_tls.origin_y | - and/or - | |
_pdbx_refine_tls.origin_z | ||
T TENSOR | ||
T11: T22: | _pdbx_refine_tls.T[1][1] | - and/or - |
_pdbx_refine_tls.T[2][2] | ||
T33: T12: | _pdbx_refine_tls.T[3][3] | - and/or - |
_pdbx_refine_tls.T[1][2] | ||
T13: T23: | _pdbx_refine_tls.T[1][3] | - and/or - |
_pdbx_refine_tls.T[2][3] | ||
L TENSOR | ||
L11: L22: | _pdbx_refine_tls.L[1][1] | - and/or - |
_pdbx_refine_tls.L[2][2] | ||
L33: L12: | _pdbx_refine_tls.L[3][3] | - and/or - |
_pdbx_refine_tls.L[1][2] | ||
L13: L23: | _pdbx_refine_tls.L[1][3] | - and/or - |
_pdbx_refine_tls.L[2][3] | ||
S TENSOR | ||
S11: S12: S13: | _pdbx_refine_tls.S[1][1] | - and/or - |
_pdbx_refine_tls.S[1][2] | - and/or - | |
_pdbx_refine_tls.S[1][3] | ||
S21: S22: S23: | _pdbx_refine_tls.S[2][1] | - and/or - |
_pdbx_refine_tls.S[2][2] | - and/or - | |
_pdbx_refine_tls.S[2][3] | ||
S31: S32: S33: | _pdbx_refine_tls.S[3][1] | - and/or - |
_pdbx_refine_tls.S[3][2] | - and/or - | |
_pdbx_refine_tls.S[3][3] | ||
NCS DETAILS | ||
NUMBER OF NCS GROUPS : | ||
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : SHELXL | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
FIT TO DATA USED IN REFINEMENT (NO CUTOFF). | ||
R VALUE (WORKING + TEST SET, NO CUTOFF) : | _pdbx_refine.R_factor_all_no_cutoff | |
R VALUE (WORKING SET, NO CUTOFF) : | _pdbx_refine.R_factor_obs_no_cutoff | |
FREE R VALUE (NO CUTOFF) : | _pdbx_refine.free_R_factor_no_cutoff | |
FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff | |
FREE R VALUE TEST SET COUNT (NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_ct_no_cutoff | |
TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : | _refine.ls_number_reflns_all | |
FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). | ||
R VALUE (WORKING + TEST SET, F>4SIG(F)) : | _pdbx_refine.R_factor_all_4sig_cutoff | |
R VALUE (WORKING SET, F>4SIG(F)) : | _pdbx_refine.R_factor_obs_4sig_cutoff | |
FREE R VALUE (F>4SIG(F)) : | _pdbx_refine.free_R_factor_4sig_cutoff | |
FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : | _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff | |
FREE R VALUE TEST SET COUNT (F>4SIG(F)) : | _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff | |
TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : | _pdbx_refine.number_reflns_obs_4sig_cutoff | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
MODEL REFINEMENT. | ||
OCCUPANCY SUM OF NON-HYDROGEN ATOMS : | _refine_analyze.occupancy_sum_non_hydrogen | |
OCCUPANCY SUM OF HYDROGEN ATOMS : | _refine_analyze.occupancy_sum_hydrogen | |
NUMBER OF DISCRETELY DISORDERED RESIDUES : | _refine_analyze.number_disordered_residues | |
NUMBER OF LEAST-SQUARES PARAMETERS : | _refine.ls_number_parameters | |
NUMBER OF RESTRAINTS : | _refine.ls_number_restraints | |
RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. | _refine_ls_restr.dev_ideal | |
BOND LENGTHS (A) : | s_bond_d | |
ANGLE DISTANCES (A) : | s_angle_d | |
SIMILAR DISTANCES (NO TARGET VALUES) (A) : | s_similar_dist | |
DISTANCES FROM RESTRAINT PLANES (A) : | s_from_restr_planes | |
ZERO CHIRAL VOLUMES (A**3) : | s_zero_chiral_vol | |
NON-ZERO CHIRAL VOLUMES (A**3) : | s_non_zero_chiral_vol | |
ANTI-BUMPING DISTANCE RESTRAINTS (A) : | s_anti_bump_dis_restr | |
RIGID-BOND ADP COMPONENTS (A**2) : | s_rigid_bond_adp_cmpnt | |
SIMILAR ADP COMPONENTS (A**2) : | s_similar_adp_cmpnt | |
APPROXIMATELY ISOTROPIC ADPS (A**2) : | s_approx_iso_adps | |
BULK SOLVENT MODELING. | ||
METHOD USED: | _refine.solvent_model_details | |
STEREOCHEMISTRY TARGET VALUES : | _refine.pdbx_stereochemistry_target_values | |
SPECIAL CASE: | _refine.pdbx_stereochem_target_val_spec_case | |
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : TNT | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
USING DATA ABOVE SIGMA CUTOFF. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
USING ALL DATA, NO SIGMA CUTOFF. | ||
R VALUE (WORKING + TEST SET, NO CUTOFF) : | _pdbx_refine.R_factor_all_no_cutoff | |
R VALUE (WORKING SET, NO CUTOFF) : | _pdbx_refine.R_factor_obs_no_cutoff | |
FREE R VALUE (NO CUTOFF) : | _pdbx_refine.free_R_factor_no_cutoff | |
FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff | |
FREE R VALUE TEST SET COUNT (NO CUTOFF) : | _pdbx_refine.free_R_val_test_set_ct_no_cutoff | |
TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : | _refine.ls_number_reflns_all | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
WILSON B VALUE (FROM FCALC, A**2) : | _reflns.B_iso_Wilson_estimate | |
RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT | _refine_ls_restr.dev_ideal | - and/or - |
_refine_ls_restr.weight | - and/or - | |
_refine_ls_restr.number | ||
BOND LENGTHS (A) : | t_bond_d | |
BOND ANGLES (DEGREES) : | t_angle_deg | |
TORSION ANGLES (DEGREES) : | t_dihedral_angle_d | |
PSEUDOROTATION ANGLES (DEGREES) : | t_pseud_angle | |
TRIGONAL CARBON PLANES (A) : | t_trig_c_planes | |
GENERAL PLANES (A) : | t_gen_planes | |
ISOTROPIC THERMAL FACTORS (A**2) : | t_it | |
NON-BONDED CONTACTS (A) : | t_nbd | |
INCORRECT CHIRAL-CENTERS (COUNT) : | t_incorr_chiral_ct | |
BULK SOLVENT MODELING. | ||
METHOD USED : | _refine.solvent_model_details | |
KSOL : | _refine.solvent_model_param_ksol | |
BSOL : | _refine.solvent_model_param_bsol | |
RESTRAINT LIBRARIES. | ||
STEREOCHEMISTRY : | _refine.pdbx_stereochemistry_target_values | |
ISOTROPIC THERMAL FACTOR RESTRAINTS : | _refine.pdbx_isotropic_thermal_model | |
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
REFINEMENT. | ||
PROGRAM : BUSTER-TNT | _software.name | |
AUTHORS : | ||
DATA USED IN REFINEMENT. | ||
RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine.ls_d_res_high | |
RESOLUTION RANGE LOW (ANGSTROMS) : | _refine.ls_d_res_low | |
DATA CUTOFF (SIGMA(F)) : | _refine.pdbx_ls_sigma_F | |
COMPLETENESS FOR RANGE (%) : | _refine.ls_percent_reflns_obs | |
NUMBER OF REFLECTIONS : | _refine.ls_number_reflns_obs | |
FIT TO DATA USED IN REFINEMENT. | ||
CROSS-VALIDATION METHOD : | _refine.pdbx_ls_cross_valid_method | |
FREE R VALUE TEST SET SELECTION : | _refine.pdbx_R_Free_selection_details | |
R VALUE (WORKING + TEST SET) : | _refine.ls_R_factor_obs | |
R VALUE (WORKING SET) : | _refine.ls_R_factor_R_work | |
FREE R VALUE : | _refine.ls_R_factor_R_free | |
FREE R VALUE TEST SET SIZE (%) : | _refine.ls_percent_reflns_R_free | |
FREE R VALUE TEST SET COUNT : | _refine.ls_number_reflns_R_free | |
ESTIMATED ERROR OF FREE R VALUE : | _refine.ls_R_factor_R_free_error | |
FIT IN THE HIGHEST RESOLUTION BIN. | ||
TOTAL NUMBER OF BINS USED : | _refine_ls_shell.pdbx_total_number_of_bins_used | |
BIN RESOLUTION RANGE HIGH (ANGSTROMS) : | _refine_ls_shell.d_res_high | |
BIN RESOLUTION RANGE LOW (ANGSTROMS) : | _refine_ls_shell.d_res_low | |
BIN COMPLETENESS (WORKING+TEST) (%) : | _refine_ls_shell.percent_reflns_obs | |
REFLECTIONS IN BIN (WORKING + TEST SET) : | _refine_ls_shell.number_reflns_all | |
BIN R VALUE (WORKING + TEST SET) : | _refine_ls_shell.R_factor_all | |
REFLECTIONS IN BIN (WORKING SET) : | _refine_ls_shell.number_reflns_R_work | |
BIN R VALUE (WORKING SET) : | _refine_ls_shell.R_factor_R_work | |
BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free | |
BIN FREE R VALUE TEST SET SIZE (%) : | _refine_ls_shell.percent_reflns_R_free | |
BIN FREE R VALUE TEST SET COUNT : | _refine_ls_shell.number_reflns_R_free | |
ESTIMATED ERROR OF BIN FREE R VALUE : | _refine_ls_shell.R_factor_R_free_error | |
NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. | ||
PROTEIN ATOMS : | _refine_hist.pdbx_number_atoms_protein | |
NUCLEIC ACID ATOMS : | _refine_hist.pdbx_number_atoms_nucleic_acid | |
HETEROGEN ATOMS : | _refine_hist.pdbx_number_atoms_ligand | |
SOLVENT ATOMS : | _refine_hist.number_atoms_solvent | |
B VALUES. | ||
B VALUE TYPE : | _refine.pdbx_TLS_residual_ADP_flag | |
FROM WILSON PLOT (A**2) : | _reflns.B_iso_Wilson_estimate | |
MEAN B VALUE (OVERALL, A**2) : | _refine.B_iso_mean | |
OVERALL ANISOTROPIC B VALUE. | ||
B11 (A**2) : | _refine.aniso_B[1][1] | |
B22 (A**2) : | _refine.aniso_B[2][2] | |
B33 (A**2) : | _refine.aniso_B[3][3] | |
B12 (A**2) : | _refine.aniso_B[1][2] | |
B13 (A**2) : | _refine.aniso_B[1][3] | |
B23 (A**2) : | _refine.aniso_B[2][3] | |
ESTIMATED COORDINATE ERROR. | ||
ESD FROM LUZZATI PLOT (A) : | _refine_analyze.Luzzati_coordinate_error_obs | |
DPI (BLOW EQ-10) BASED ON R VALUE (A) : | _refine.pdbx_overall_SU_R_Blow_DPI | |
DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : | _refine.pdbx_overall_SU_R_free_Blow_DPI | |
DPI (CRUICKSHANK) BASED ON R VALUE (A) : | _refine.overall_SU_R_Cruickshank_DPI | |
DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : | _refine.pdbx_overall_SU_R_free_Cruickshank_DPI | |
REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 | ||
CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 | ||
CORRELATION COEFFICIENTS. | ||
CORRELATION COEFFICIENT FO-FC : | _refine.correlation_coeff_Fo_to_Fc | |
CORRELATION COEFFICIENT FO-FC FREE : | _refine.correlation_coeff_Fo_to_Fc_free | |
NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 | ||
TERM COUNT WEIGHT FUNCTION. | _refine_ls_restr.number | - and/or - |
_refine_ls_restr.weight | - and/or - | |
_refine_ls_restr.pdbx_restraint_function | ||
BOND LENGTHS : | t_bond_d | |
BOND ANGLES : | t_angle_deg | |
TORSION ANGLES : | t_dihedral_angle_d | |
TRIGONAL CARBON PLANES : | t_trig_c_planes | |
GENERAL PLANES : | t_gen_planes | |
ISOTROPIC THERMAL FACTORS : | t_it | |
BAD NON-BONDED CONTACTS : | t_nbd | |
IMPROPER TORSIONS : | t_improper_torsion | |
PSEUDOROTATION ANGLES : | t_pseud_angle | |
CHIRAL IMPROPER TORSION : | t_chiral_improper_torsion | |
SUM OF OCCUPANCIES : | t_sum_occupancies | |
UTILITY DISTANCES : | t_utility_distance | |
UTILITY ANGLES : | t_utility_angle | |
UTILITY TORSION : | t_utility_torsion | |
IDEAL-DIST CONTACT TERM : | t_ideal_dist_contact | |
RMS DEVIATIONS FROM IDEAL VALUES. | _refine_ls_restr.dev_ideal | |
BOND LENGTHS (A) : | t_bond_d | |
BOND ANGLES (DEGREES) : | t_angle_deg | |
PEPTIDE OMEGA TORSION ANGLES (DEGREES) : | t_omega_torsion | |
OTHER TORSION ANGLES (DEGREES) : | t_other_torsion | |
TLS DETAILS | ||
NUMBER OF TLS GROUPS : | ||
TLS GROUP : | _pdbx_refine_tls.id | |
SELECTION: | _pdbx_refine_tls_group.selection_details | |
ORIGIN FOR THE GROUP (A): | _pdbx_refine_tls.origin_x | - and/or - |
_pdbx_refine_tls.origin_y | - and/or - | |
_pdbx_refine_tls.origin_z | ||
T TENSOR | ||
T11: T22: | _pdbx_refine_tls.T[1][1] | - and/or - |
_pdbx_refine_tls.T[2][2] | ||
T33: T12: | _pdbx_refine_tls.T[3][3] | - and/or - |
_pdbx_refine_tls.T[1][2] | ||
T13: T23: | _pdbx_refine_tls.T[1][3] | - and/or - |
_pdbx_refine_tls.T[2][3] | ||
L TENSOR | ||
L11: L22: | _pdbx_refine_tls.L[1][1] | - and/or - |
_pdbx_refine_tls.L[2][2] | ||
L33: L12: | _pdbx_refine_tls.L[3][3] | - and/or - |
_pdbx_refine_tls.L[1][2] | ||
L13: L23: | _pdbx_refine_tls.L[1][3] | - and/or - |
_pdbx_refine_tls.L[2][3] | ||
S TENSOR | ||
S11: S12: S13: | _pdbx_refine_tls.S[1][1] | - and/or - |
_pdbx_refine_tls.S[1][2] | - and/or - | |
_pdbx_refine_tls.S[1][3] | ||
S21: S22: S23: | _pdbx_refine_tls.S[2][1] | - and/or - |
_pdbx_refine_tls.S[2][2] | - and/or - | |
_pdbx_refine_tls.S[2][3] | ||
S31: S32: S33: | _pdbx_refine_tls.S[3][1] | - and/or - |
_pdbx_refine_tls.S[3][2] | - and/or - | |
_pdbx_refine_tls.S[3][3] | ||
OTHER REFINEMENT REMARKS: | _refine.details |
Remark Field Name | mmCIF Data Item | |
---|---|---|
EXPERIMENTAL DETAILS | ||
EXPERIMENT TYPE : NEUTRON DIFFRACTION | ||
DATE OF DATA COLLECTION : | _diffrn_detector.pdbx_collection_date | |
TEMPERATURE (KELVIN) : | _diffrn.ambient_temp | |
PH : | _exptl_crystal_grow.pH | - and/or - |
_exptl_crystal_grow.pdbx_pH_range | ||
NUMBER OF CRYSTALS USED : | _exptl.crystals_number | |
NEUTRON SOURCE : | _diffrn_source.source | |
BEAMLINE : | _diffrn_source.pdbx_synchrotron_beamline | |
WAVELENGTH OR RANGE (A) : | _diffrn_source.pdbx_wavelength | |
MONOCHROMATOR : | _diffrn_radiation.monochromator | |
OPTICS : | _diffrn_detector.details | |
DETECTOR TYPE : | _diffrn_detector.detector | |
DETECTOR MANUFACTURER : | _diffrn_detector.type | |
INTENSITY-INTEGRATION SOFTWARE : | _computing.pdbx_data_reduction_ii | |
DATA SCALING SOFTWARE : | _computing.pdbx_data_reduction_ds | |
NUMBER OF UNIQUE REFLECTIONS : | _reflns.number_obs | |
RESOLUTION RANGE HIGH (A) : | _reflns.d_resolution_high | |
RESOLUTION RANGE LOW (A) : | _reflns.d_resolution_low | |
REJECTION CRITERIA (SIGMA(I)) : | _reflns.observed_criterion_sigma_I | |
OVERALL. | ||
COMPLETENESS FOR RANGE (%) : | _reflns.percent_possible_obs | |
DATA REDUNDANCY : | _reflns.pdbx_redundancy | |
R MERGE (I) : | _reflns.pdbx_Rmerge_I_obs | |
R SYM (I) : | _reflns.pdbx_Rsym_value | |
<I/SIGMA(I)> FOR THE DATA SET : | _reflns.pdbx_netI_over_sigmaI | |
IN THE HIGHEST RESOLUTION SHELL. | ||
HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : | _reflns_shell.d_res_high | |
HIGHEST RESOLUTION SHELL, RANGE LOW (A) : | _reflns_shell.d_res_low | |
COMPLETENESS FOR SHELL (%) : | _reflns_shell.percent_possible_all | |
DATA REDUNDANCY IN SHELL : | _reflns_shell.pdbx_redundancy | |
R MERGE FOR SHELL (I) : | _reflns_shell.Rmerge_I_obs | |
R SYM FOR SHELL (I) : | _reflns_shell.pdbx_Rsym_value | |
<I/SIGMA(I)> FOR SHELL : | _reflns_shell.meanI_over_sigI_obs | |
METHOD USED TO DETERMINE THE STRUCTURE: | _refine.pdbx_method_to_determine_struct | |
SOFTWARE USED : | _computing.structure_solution | |
STARTING MODEL: | _refine.pdbx_starting_model | |
REMARK: | _exptl_crystal.description |
Remark Field Name | mmCIF Data Item | |
---|---|---|
EXPERIMENTAL DETAILS | ||
RECONSTRUCTION METHOD : | _em_experiment.reconstruction_method | |
SAMPLE TYPE : | _em_assembly.aggregation_state | |
SPECIMEN TYPE : | _em_experiment.specimen_type | |
DATA ACQUISITION | ||
DATE OF DATA COLLECTION : | _diffrn_detector.pdbx_collection_date | |
TEMPERATURE (KELVIN) : | _diffrn.ambient_temp | |
PH : | _exptl_crystal_grow.pH | - and/or - |
_exptl_crystal_grow.pdbx_pH_range | ||
NUMBER OF CRYSTALS USED : | _exptl.crystals_number | |
MICROSCOPE MODEL : | _em_imaging.microscope_model | |
DETECTOR TYPE : | _em_detector.type | |
ACCELERATION VOLTAGE (KV) : | _em_imaging.accelerating_voltage | |
NUMBER OF UNIQUE REFLECTIONS : | _reflns.number_obs | |
RESOLUTION RANGE HIGH (A) : | _reflns.d_resolution_high | |
RESOLUTION RANGE LOW (A) : | _reflns.d_resolution_low | |
DATA SCALING SOFTWARE : | _computing.pdbx_data_reduction_ds | |
COMPLETENESS FOR RANGE (%) : | _reflns.percent_possible_obs | |
DATA REDUNDANCY : | _reflns.pdbx_redundancy | |
IN THE HIGHEST RESOLUTION SHELL | ||
HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : | _reflns_shell.d_res_high | |
HIGHEST RESOLUTION SHELL, RANGE LOW (A) : | _reflns_shell.d_res_low | |
COMPLETENESS FOR SHELL (%) : | _reflns_shell.percent_possible_all | |
DATA REDUNDANCY IN SHELL : | _reflns_shell.pdbx_redundancy | |
R MERGE FOR SHELL (I) : | _reflns_shell.Rmerge_I_obs | |
METHOD USED TO DETERMINE THE STRUCTURE: | _refine.pdbx_method_to_determine_struct | |
SOFTWARE USED : | _computing.structure_solution | |
STARTING MODEL : | _refine.pdbx_starting_model |
Remark Field Name | mmCIF Data Item | |
---|---|---|
CRYSTAL | ||
SOLVENT CONTENT, VS (%): | _exptl_crystal.density_percent_sol | |
MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): | _exptl_crystal.density_Matthews | |
CRYSTALLIZATION CONDITIONS: | _exptl_crystal_grow.pdbx_details |
Remark Field Name | mmCIF Category | |
---|---|---|
CLOSE CONTACTS IN SAME ASYMMETRIC UNIT: | pdbx_validate_close_contact | |
CLOSE CONTACTS: | pdbx_validate_symm_contact | |
COVALENT BOND LENGTHS: | pdbx_validate_rmsd_bond | |
COVALENT BOND ANGLES: | pdbx_validate_rmsd_angle | |
TORSION ANGLES: | pdbx_validate_torsion | |
NON-CIS, NON-TRANS: | pdbx_validate_peptide_omega | |
PLANAR GROUPS: | pdbx_validate_planes | |
MAIN CHAIN PLANARITY: | pdbx_validate_main_chain_plane | |
CHIRAL CENTERS: | pdbx_validate_chiral |
Remark Field Name | mmCIF Data Item | |
---|---|---|
SITE | ||
SITE_IDENTIFIER: | _struct_site.id | |
EVIDENCE_CODE: | _struct_site.pdbx_evidence_code | |
SITE_DESCRIPTION: | _struct_site.details |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
PDB_ID_Code | _struct_ref_seq.pdbx_PDB_id_code | |
Strand_ID | _struct_ref_seq.pdbx_strand_id | |
Begin_Residue_Number | _struct_ref_seq.seq_align_beg | |
Begin_Ins_Code | _struct_ref_seq.pdbx_seq_align_beg_ins_code | |
End_Residue_Number | _struct_ref_seq.seq_align_end | |
End_Ins_Code | _struct_ref_seq.pdbx_seq_align_end_ins_code | |
Database | _struct_ref.db_name | |
Database_Accession_No | _struct_ref_seq.pdbx_db_accession | |
Database_ID_Code | _struct_ref.db_code | |
Database_Begin_Residue_Number | _struct_ref_seq.db_align_beg | |
Databaes_Begin_Ins_Code | n.a. | |
Database_End_Residue_Number | _struct_ref_seq.db_align_end | |
Databaes_End_Ins_Code | n.a. |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
PDB_ID_Code | _struct_ref_seq_dif.pdbx_pdb_id_code | |
PDB_Res_Name_In_Conflict | _struct_ref_seq_dif.mon_id | |
PDB_Strand_ID | _struct_ref_seq_dif.pdbx_pdb_strand_id | |
PDB_Residue_Number | _struct_ref_seq_dif.seq_num | |
PDB_Ins_Code | _struct_ref_seq_dif.pdbx_pdb_ins_code | |
Sequence_Database | _struct_ref_seq_dif.pdbx_seq_db_name | |
Seq_Database_Accession_No | _struct_ref_seq_dif.pdbx_seq_db_accession_code | |
Seq_Res_Name | _struct_ref_seq_dif.db_mon_id | |
Seq_Residue_Number | _struct_ref_seq_dif.pdbx_seq_db_seq_num | |
Conflict_Comment | _struct_ref_seq_dif.details |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
PDB_ID_Code | n.a. | |
Residue_Name_Used | _pdbx_struct_mod_residue.auth_comp_id | |
Strand_ID | _pdbx_struct_mod_residue.auth_asym_id | |
Residue_Number | _pdbx_struct_mod_residue.auth_seq_id | |
Ins_Code | _pdbx_struct_mod_residue.PDB_ins_code | |
Standard_Residue_Name | _pdbx_struct_mod_residue.parent_comp_id | |
Modification_Description | _pdbx_struct_mod_residue.details |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _n.a. | |
Het_Group_ID | _pdbx_nonpoly_scheme.pdb_mon_id | |
Het_Strand_ID | _pdbx_nonpoly_scheme.pdb_strand_id | |
Het_Seq_No | _pdbx_nonpoly_scheme.pdb_seq_num | |
Het_Ins_Code | _pdbx_nonpoly_scheme.pdb_ins_code | |
Het_No_Atoms | _n.a. | |
Het_Text | _n.a. |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Het_Group_ID | n.a. | |
Chemical_Name | _chem_comp.name |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Continuation | n.a. | |
Het_Group_ID | n.a. | |
Synonyms | _chem_comp.pdbx_synonyms |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Formula_Component_No | n.a. | |
Het_Group_ID | _chem_comp.id | |
Continuation | n.a. | |
Formula_MW | _chem_comp.formula_weight | |
Formula | _chem_comp.formula |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _struct_conf.conf_type_id | - and/or - | _struct_conf_type.id |
Serial_No | _struct_conf.id | |
Helix_id | _struct_conf.pdbx_PDB_helix_id | |
Beg_NDB_res_name | _struct_conf.beg_auth_comp_id | |
Beg_NDB_Strand_ID | _struct_conf.beg_auth_asym_id | |
Beg_NDB_res_num | _struct_conf.beg_auth_seq_id | |
Beg_NDB_ins_code | _struct_conf.pdbx_beg_PDB_ins_code | |
End_NDB_res_name | _struct_conf.end_auth_comp_id | |
End_NDB_Strand_ID | _struct_conf.end_auth_asym_id | |
End_NDB_res_num | _struct_conf.end_auth_seq_id | |
End_NDB_ins_code | _struct_conf.pdbx_end_PDB_ins_code | |
Helix_class | _struct_conf.pdbx_PDB_helix_class | |
Details | _struct_conf.details | |
Length | _struct_conf.pdbx_PDB_helix_length |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _struct_conn.conn_type_id | - and/or - | _struct_conn_type.id |
Serial_No | _struct_conn.id | |
NDB_Res_Name_CYS_1 | _struct_conn.ptnr1_auth_comp_id | |
NDB_Strand_ID_CYS_1 | _struct_conn.ptnr1_auth_asym_id | |
NDB_Res_No_CYS_1 | _struct_conn.ptnr1_auth_seq_id | |
NDB_Ins_Code_CYS_1 | _struct_conn.pdbx_ptnr1_PDB_ins_code | |
NDB_Res_Name_CYS_2 | _struct_conn.ptnr2_auth_comp_id | |
NDB_Strand_ID_CYS_2 | _struct_conn.ptnr2_auth_asym_id | |
NDB_Res_No_CYS_2 | _struct_conn.ptnr2_auth_seq_id | |
NDB_Ins_Code_CYS_2 | _struct_conn.pdbx_ptnr2_PDB_ins_code | |
Symmetry_Operator_1 | _struct_conn.ptnr1_symmetry | |
Symmetry_Operator_2 | _struct_conn.ptnr2_symmetry | |
Distance | _struct_conn.pdbx_dist_value |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _struct_conn.conn_type_id | - and/or - | _struct_conn_type.id |
Atom_Name_1 | _struct_conn.ptnr1_label_atom_id | |
Alt_Loc_1 | _struct_conn.pdbx_ptnr1_label_alt_id | |
Residue_Name_1 | _struct_conn.ptnr1_auth_comp_id | |
Strand_ID_1 | _struct_conn.ptnr1_auth_asym_id | |
Residue_Number_1 | _struct_conn.ptnr1_auth_seq_id | |
Ins_Code_1 | _struct_conn.pdbx_ptnr1_PDB_ins_code | |
Atom_Name_2 | _struct_conn.ptnr2_label_atom_id | |
Alt_Loc_2 | _struct_conn.pdbx_ptnr2_label_alt_id | |
Residue_Name_2 | _struct_conn.ptnr2_auth_comp_id | |
Strand_ID_2 | _struct_conn.ptnr2_auth_asym_id | |
Residue_Number_2 | _struct_conn.ptnr2_auth_seq_id | |
Ins_Code_2 | _struct_conn.pdbx_ptnr2_PDB_ins_code | |
Symmetry_Operator_1 | _struct_conn.ptnr1_symmetry | |
Symmetry_Operator_2 | _struct_conn.ptnr2_symmetry | |
Distance | _struct_conn.pdbx_dist_value |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Serial_No | _struct_mon_prot_cis.pdbx_id | |
Residue_Name_1 | _struct_mon_prot_cis.auth_comp_id | |
Strand_ID_1 | _struct_mon_prot_cis.auth_asym_id | |
Sequence_Number_1 | _struct_mon_prot_cis.auth_seq_id | |
Ins_Code_1 | _struct_mon_prot_cis.pdbx_PDB_ins_code | |
Residue_Name_2 | _struct_mon_prot_cis.pdbx_auth_comp_id_2 | |
Strand_ID_2 | _struct_mon_prot_cis.pdbx_auth_asym_id_2 | |
Sequence_Number_2 | _struct_mon_prot_cis.pdbx_auth_seq_id_2 | |
Ins_Code_2 | _struct_mon_prot_cis.pdbx_PDB_ins_code_2 | |
Model_Num | _struct_mon_prot_cis.pdbx_PDB_model_num | |
Angle | _struct_mon_prot_cis.pdbx_omega_angle |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Serial_No | _struct_site_gen.id | |
Site_ID | _struct_site_gen.site_id | |
Residue_No | _struct_site_gen.pdbx_num_res | |
Residue_Name_1 | _struct_site_gen.auth_comp_id | |
Strand_ID_1 | _struct_site_gen.auth_asym_id | |
Seq_No_1 | _struct_site_gen.auth_seq_id | |
Ins_Code_1 | _struct_site_gen.pdbx_auth_ins_code | |
Residue_Name_2 | _struct_site_gen.auth_comp_id | |
Strand_ID_2 | _struct_site_gen.auth_asym_id | |
Seq_No_2 | _struct_site_gen.auth_seq_id | |
Ins_Code_2 | _struct_site_gen.pdbx_auth_ins_code | |
Residue_Name_3 | _struct_site_gen.auth_comp_id | |
Strand_ID_3 | _struct_site_gen.auth_asym_id | |
Seq_No_3 | _struct_site_gen.auth_seq_id | |
Ins_Code_3 | _struct_site_gen.pdbx_auth_ins_code | |
Residue_Name_4 | _struct_site_gen.auth_comp_id | |
Strand_ID_4 | _struct_site_gen.auth_asym_id | |
Seq_No_4 | _struct_site_gen.auth_seq_id | |
Ins_Code_4 | _struct_site_gen.pdbx_auth_ins_code |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
a | _cell.length_a | |
b | _cell.length_b | |
c | _cell.length_c | |
Alpha | _cell.angle_alpha | |
Beta | _cell.angle_beta | |
Gamma | _cell.angle_gamma | |
Space_Group | _symmetry.space_group_name_H-M | |
Z | _cell.Z_PDB |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
X | _database_PDB_matrix.origx[1][1] | - and/or - | _database_PDB_matrix.origx[2][1] | - and/or - | _database_PDB_matrix.origx[3][1] |
Y | _database_PDB_matrix.origx[1][2] | - and/or - | _database_PDB_matrix.origx[2][2] | - and/or - | _database_PDB_matrix.origx[3][2] |
Z | _database_PDB_matrix.origx[1][3] | - and/or - | _database_PDB_matrix.origx[2][3] | - and/or - | _database_PDB_matrix.origx[3][3] |
T | _database_PDB_matrix.origx_vector[1] | - and/or - | _database_PDB_matrix.origx_vector[2] | - and/or - | _database_PDB_matrix.origx_vector[3] |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
X | _atom_sites.fract_transf_matrix[1][1] | - and/or - | _atom_sites.fract_transf_matrix[2][1] | - and/or - | _atom_sites.fract_transf_matrix[3][1] |
Y | _atom_sites.fract_transf_matrix[1][2] | - and/or - | _atom_sites.fract_transf_matrix[2][2] | - and/or - | _atom_sites.fract_transf_matrix[3][2] |
Z | _atom_sites.fract_transf_matrix[1][3] | - and/or - | _atom_sites.fract_transf_matrix[2][3] | - and/or - | _atom_sites.fract_transf_matrix[3][3] |
U | _atom_sites.fract_transf_vector[1] | - and/or - | _atom_sites.fract_transf_vector[2] | - and/or - | _atom_sites.fract_transf_vector[3] |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
SerialNo | _struct_ncs_oper.id | |
X | _struct_ncs_oper.matrix[1][1] | - and/or - | _struct_ncs_oper.matrix[2][1] | - and/or - | _struct_ncs_oper.matrix[3][1] |
Y | _struct_ncs_oper.matrix[1][2] | - and/or - | _struct_ncs_oper.matrix[2][2] | - and/or - | _struct_ncs_oper.matrix[3][2] |
Z | _struct_ncs_oper.matrix[1][3] | - and/or - | _struct_ncs_oper.matrix[2][3] | - and/or - | _struct_ncs_oper.matrix[3][3] |
V | _struct_ncs_oper.vector[1] | - and/or - | _struct_ncs_oper.vector[2] | - and/or - | _struct_ncs_oper.vector[3] |
IGIVEN | _struct_ncs_oper.code |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
SerialNo | _atom_site.pdbx_PDB_model_num |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _atom_site.group_PDB | |
Serial_No | _atom_site.id | |
Atom_Name | _atom_site.auth_atom_id | |
Alt_Loc | _atom_site.label_alt_id | |
Residue_Name | _atom_site.auth_comp_id | |
Strand_ID | _atom_site.auth_asym_id | |
Residue_No | _atom_site.auth_seq_id | |
Ins_Code | _atom_site.pdbx_PDB_ins_code | |
X | _atom_site.Cartn_x | |
Y | _atom_site.Cartn_y | |
Z | _atom_site.Cartn_z | |
Occupancy | _atom_site.occupancy | |
T_Factor | _atom_site.B_iso_or_equiv | |
Sigma_X | _atom_site.Cartn_x_esd | |
Sigma_Y | _atom_site.Cartn_y_esd | |
Sigma_Z | _atom_site.Cartn_z_esd | |
Sigma_Occupancy | _atom_site.occupancy_esd | |
Sigma_T_Factor | _atom_site.B_iso_or_equiv_esd | |
Symbol | _atom_site.type_symbol | |
Charge | _atom_site.pdbx_formal_charge |
Field Name | mmCIF Data Item | |
---|---|---|
Section | _n.a. | |
Serial_No | _atom_site_anisotrop.id | |
Atom_Name | _atom_site_anisotrop.pdbx_auth_atom_id | |
Alt_Loc | _atom_site_anisotrop.pdbx_label_alt_id | |
Residue_Name | _atom_site_anisotrop.pdbx_auth_comp_id | |
Strand_ID | _atom_site_anisotrop.pdbx_auth_asym_id | |
Residue_No | _atom_site_anisotrop.pdbx_auth_seq_id | |
Ins_Code | _atom_site_anisotrop.pdbx_PDB_ins_code | |
U11 | _atom_site_anisotrop.U[1][1] | |
U22 | _atom_site_anisotrop.U[2][2] | |
U33 | _atom_site_anisotrop.U[3][3] | |
U12 | _atom_site_anisotrop.U[1][2] | |
U13 | _atom_site_anisotrop.U[1][3] | |
U23 | _atom_site_anisotrop.U[2][3] | |
Sigma_U11 | _atom_site_anisotrop.U[1][1]_esd | |
Sigma_U22 | _atom_site_anisotrop.U[2][2]_esd | |
Sigma_U33 | _atom_site_anisotrop.U[3][3]_esd | |
Sigma_U12 | _atom_site_anisotrop.U[1][2]_esd | |
Sigma_U13 | _atom_site_anisotrop.U[1][3]_esd | |
Sigma_U23 | _atom_site_anisotrop.U[2][3]_esd | |
Symbol | _atom_site_anisotrop.type_symbol |
Field Name | mmCIF Data Item | |
---|---|---|
Section | n.a. | |
Serial_No | n.a. | |
Bonded_Atom_1 | n.a. | |
Bonded_Atom_2 | n.a. | |
Bonded_Atom_3 | n.a. | |
Bonded_Atom_4 | n.a. | |
H_Bond_Donor_1 | n.a. | |
H_Bond_Donor_2 | n.a. | |
Salt_Bridge_1 | n.a. | |
H_Bond_Acceptor_1 | n.a. | |
H_Bond_Acceptor_2 | n.a. | |
Salt_Bridge_2 | n.a. |