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mmcif_pdbx_vrpt.dic
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Supporting Data
- A -
Categories
1
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audit_conform
Items
3
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_audit_conform.dict_name
_audit_conform.dict_version
_audit_conform.dict_location
- P -
Categories
65
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pdbx_vrpt_summary
Items
10
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_pdbx_vrpt_summary.entry_id
_pdbx_vrpt_summary.EMDB_deposition_date
_pdbx_vrpt_summary.PDB_deposition_date
_pdbx_vrpt_summary.PDB_revision_date
_pdbx_vrpt_summary.PDB_revision_number
_pdbx_vrpt_summary.RNA_suiteness
_pdbx_vrpt_summary.attempted_validation_steps
_pdbx_vrpt_summary.ligands_for_buster_report
_pdbx_vrpt_summary.report_creation_date
_pdbx_vrpt_summary.restypes_notchecked_for_bond_angle_geometry
pdbx_vrpt_model_list
Items
3
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_pdbx_vrpt_model_list.PDB_model_num
_pdbx_vrpt_model_list.nmrclust_cluster_id
_pdbx_vrpt_model_list.nmrclust_representative
pdbx_vrpt_model_instance
Items
21
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_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_chiral_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_ring_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
_pdbx_vrpt_model_instance.count_plane_outliers
_pdbx_vrpt_model_instance.count_symm_clashes
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.ligand_of_interest
pdbx_vrpt_cyrange_domain
Items
9
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_pdbx_vrpt_cyrange_domain.ordinal
_pdbx_vrpt_cyrange_domain.domain
_pdbx_vrpt_cyrange_domain.medoid_model
_pdbx_vrpt_cyrange_domain.medoid_rmsd
_pdbx_vrpt_cyrange_domain.number_of_gaps
_pdbx_vrpt_cyrange_domain.number_of_residues
_pdbx_vrpt_cyrange_domain.percentage_of_core
_pdbx_vrpt_cyrange_domain.residue_string
_pdbx_vrpt_cyrange_domain.rmsd
pdbx_vrpt_summary_entity_fit_to_map
Items
7
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_pdbx_vrpt_summary_entity_fit_to_map.ordinal
_pdbx_vrpt_summary_entity_fit_to_map.PDB_model_num
_pdbx_vrpt_summary_entity_fit_to_map.Q_score
_pdbx_vrpt_summary_entity_fit_to_map.auth_asym_id
_pdbx_vrpt_summary_entity_fit_to_map.average_residue_inclusion
_pdbx_vrpt_summary_entity_fit_to_map.entity_id
_pdbx_vrpt_summary_entity_fit_to_map.label_asym_id
pdbx_vrpt_summary_entity_geometry
Items
10
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_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.average_residue_inclusion
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
pdbx_vrpt_chemical_shift_list
Items
12
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_pdbx_vrpt_chemical_shift_list.ordinal
_pdbx_vrpt_chemical_shift_list.block_name
_pdbx_vrpt_chemical_shift_list.file_id
_pdbx_vrpt_chemical_shift_list.file_name
_pdbx_vrpt_chemical_shift_list.list_id
_pdbx_vrpt_chemical_shift_list.number_of_errors_while_mapping
_pdbx_vrpt_chemical_shift_list.number_of_mapped_shifts
_pdbx_vrpt_chemical_shift_list.number_of_parsed_shifts
_pdbx_vrpt_chemical_shift_list.number_of_unparsed_shifts
_pdbx_vrpt_chemical_shift_list.number_of_warnings_while_mapping
_pdbx_vrpt_chemical_shift_list.total_number_of_shifts
_pdbx_vrpt_chemical_shift_list.type
pdbx_vrpt_unmapped_chemical_shift
Items
9
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_pdbx_vrpt_unmapped_chemical_shift.ordinal
_pdbx_vrpt_unmapped_chemical_shift.ambiguity
_pdbx_vrpt_unmapped_chemical_shift.auth_asym_id
_pdbx_vrpt_unmapped_chemical_shift.auth_seq_id
_pdbx_vrpt_unmapped_chemical_shift.diagnostic
_pdbx_vrpt_unmapped_chemical_shift.error
_pdbx_vrpt_unmapped_chemical_shift.label_atom_id
_pdbx_vrpt_unmapped_chemical_shift.rescode
_pdbx_vrpt_unmapped_chemical_shift.value
pdbx_vrpt_unparsed_chemical_shift
Items
10
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_pdbx_vrpt_unparsed_chemical_shift.ordinal
_pdbx_vrpt_unparsed_chemical_shift.ambiguity
_pdbx_vrpt_unparsed_chemical_shift.auth_asym_id
_pdbx_vrpt_unparsed_chemical_shift.auth_seq_id
_pdbx_vrpt_unparsed_chemical_shift.diagnostic
_pdbx_vrpt_unparsed_chemical_shift.error
_pdbx_vrpt_unparsed_chemical_shift.id
_pdbx_vrpt_unparsed_chemical_shift.label_atom_id
_pdbx_vrpt_unparsed_chemical_shift.rescode
_pdbx_vrpt_unparsed_chemical_shift.value
pdbx_vrpt_missing_nmrstar_tags
Items
3
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_pdbx_vrpt_missing_nmrstar_tags.ordinal
_pdbx_vrpt_missing_nmrstar_tags.nmrstar_tag
_pdbx_vrpt_missing_nmrstar_tags.nmrstar_tag_description
pdbx_vrpt_random_coil_index
Items
5
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_pdbx_vrpt_random_coil_index.ordinal
_pdbx_vrpt_random_coil_index.auth_asym_id
_pdbx_vrpt_random_coil_index.auth_seq_id
_pdbx_vrpt_random_coil_index.rescode
_pdbx_vrpt_random_coil_index.value
pdbx_vrpt_chemical_shift_outlier
Items
9
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_pdbx_vrpt_chemical_shift_outlier.ordinal
_pdbx_vrpt_chemical_shift_outlier.auth_asym_id
_pdbx_vrpt_chemical_shift_outlier.auth_seq_id
_pdbx_vrpt_chemical_shift_outlier.label_atom_id
_pdbx_vrpt_chemical_shift_outlier.method
_pdbx_vrpt_chemical_shift_outlier.prediction
_pdbx_vrpt_chemical_shift_outlier.rescode
_pdbx_vrpt_chemical_shift_outlier.value
_pdbx_vrpt_chemical_shift_outlier.zscore
pdbx_vrpt_referencing_offset
Items
6
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_pdbx_vrpt_referencing_offset.ordinal
_pdbx_vrpt_referencing_offset.label_atom_id
_pdbx_vrpt_referencing_offset.number_of_measurements
_pdbx_vrpt_referencing_offset.precision
_pdbx_vrpt_referencing_offset.uncertainty
_pdbx_vrpt_referencing_offset.value
pdbx_vrpt_assign_completeness_well_defined
Items
6
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_pdbx_vrpt_assign_completeness_well_defined.ordinal
_pdbx_vrpt_assign_completeness_well_defined.element
_pdbx_vrpt_assign_completeness_well_defined.number_of_assigned_shifts
_pdbx_vrpt_assign_completeness_well_defined.number_of_shifts
_pdbx_vrpt_assign_completeness_well_defined.number_of_unassigned_shifts
_pdbx_vrpt_assign_completeness_well_defined.type
pdbx_vrpt_assign_completeness_full_length
Items
6
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_pdbx_vrpt_assign_completeness_full_length.ordinal
_pdbx_vrpt_assign_completeness_full_length.element
_pdbx_vrpt_assign_completeness_full_length.number_of_assigned_shifts
_pdbx_vrpt_assign_completeness_full_length.number_of_shifts
_pdbx_vrpt_assign_completeness_full_length.number_of_unassigned_shifts
_pdbx_vrpt_assign_completeness_full_length.type
pdbx_vrpt_software
Items
6
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_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.classification
_pdbx_vrpt_software.details
_pdbx_vrpt_software.name
_pdbx_vrpt_software.success_y_or_n
_pdbx_vrpt_software.version
pdbx_vrpt_instance_intra_bond_outliers
Items
9
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_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.Z
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.link
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.stdev
pdbx_vrpt_instance_intra_angle_outliers
Items
10
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_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.link
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.stdev
pdbx_vrpt_instance_stereo_outliers
Items
4
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_pdbx_vrpt_instance_stereo_outliers.ordinal
_pdbx_vrpt_instance_stereo_outliers.instance_id
_pdbx_vrpt_instance_stereo_outliers.label_atom_id
_pdbx_vrpt_instance_stereo_outliers.problem
pdbx_vrpt_instance_intra_plane_outliers
Items
6
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_pdbx_vrpt_instance_intra_plane_outliers.ordinal
_pdbx_vrpt_instance_intra_plane_outliers.improper
_pdbx_vrpt_instance_intra_plane_outliers.instance_id
_pdbx_vrpt_instance_intra_plane_outliers.omega
_pdbx_vrpt_instance_intra_plane_outliers.plane_rmsd
_pdbx_vrpt_instance_intra_plane_outliers.type
pdbx_vrpt_instance_clashes
Items
6
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_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
pdbx_vrpt_instance_symm_clashes
Items
7
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_pdbx_vrpt_instance_symm_clashes.ordinal
_pdbx_vrpt_instance_symm_clashes.clashmag
_pdbx_vrpt_instance_symm_clashes.dist
_pdbx_vrpt_instance_symm_clashes.instance_id
_pdbx_vrpt_instance_symm_clashes.label_atom_id
_pdbx_vrpt_instance_symm_clashes.scid
_pdbx_vrpt_instance_symm_clashes.symop
pdbx_vrpt_instance_mogul_bond_outliers
Items
10
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_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
pdbx_vrpt_instance_mogul_angle_outliers
Items
11
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_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
pdbx_vrpt_instance_mogul_torsion_outliers
Items
12
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_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
pdbx_vrpt_instance_mogul_ring_outliers
Items
7
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_pdbx_vrpt_instance_mogul_ring_outliers.ordinal
_pdbx_vrpt_instance_mogul_ring_outliers.atoms
_pdbx_vrpt_instance_mogul_ring_outliers.instance_id
_pdbx_vrpt_instance_mogul_ring_outliers.mean
_pdbx_vrpt_instance_mogul_ring_outliers.mindiff
_pdbx_vrpt_instance_mogul_ring_outliers.numobs
_pdbx_vrpt_instance_mogul_ring_outliers.stdev
pdbx_vrpt_restraint_summary
Items
3
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_pdbx_vrpt_restraint_summary.ordinal
_pdbx_vrpt_restraint_summary.description
_pdbx_vrpt_restraint_summary.value
pdbx_vrpt_residual_angle_violations
Items
4
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_pdbx_vrpt_residual_angle_violations.ordinal
_pdbx_vrpt_residual_angle_violations.bins
_pdbx_vrpt_residual_angle_violations.max_violation
_pdbx_vrpt_residual_angle_violations.violations_per_model
pdbx_vrpt_distance_violation_summary
Items
11
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_pdbx_vrpt_distance_violation_summary.ordinal
_pdbx_vrpt_distance_violation_summary.consistently_violated_count
_pdbx_vrpt_distance_violation_summary.consistently_violated_percent_total
_pdbx_vrpt_distance_violation_summary.consistently_violated_percent_type
_pdbx_vrpt_distance_violation_summary.percent_total
_pdbx_vrpt_distance_violation_summary.restraint_sub_type
_pdbx_vrpt_distance_violation_summary.restraint_type
_pdbx_vrpt_distance_violation_summary.restraints_count
_pdbx_vrpt_distance_violation_summary.violated_count
_pdbx_vrpt_distance_violation_summary.violated_percent_total
_pdbx_vrpt_distance_violation_summary.violated_percent_type
pdbx_vrpt_distance_violation_model_summary
Items
6
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_pdbx_vrpt_distance_violation_model_summary.ordinal
_pdbx_vrpt_distance_violation_model_summary.PDB_model_num
_pdbx_vrpt_distance_violation_model_summary.max_violation
_pdbx_vrpt_distance_violation_model_summary.mean_violation
_pdbx_vrpt_distance_violation_model_summary.median_violation
_pdbx_vrpt_distance_violation_model_summary.standard_deviation
pdbx_vrpt_distance_violation_model_restraints
Items
4
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_pdbx_vrpt_distance_violation_model_restraints.ordinal
_pdbx_vrpt_distance_violation_model_restraints.PDB_model_num
_pdbx_vrpt_distance_violation_model_restraints.dist_rest_type
_pdbx_vrpt_distance_violation_model_restraints.violations_count
pdbx_vrpt_violated_dihedralangle_restraints
Items
12
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_pdbx_vrpt_violated_dihedralangle_restraints.ordinal
_pdbx_vrpt_violated_dihedralangle_restraints.atom_1
_pdbx_vrpt_violated_dihedralangle_restraints.atom_2
_pdbx_vrpt_violated_dihedralangle_restraints.atom_3
_pdbx_vrpt_violated_dihedralangle_restraints.atom_4
_pdbx_vrpt_violated_dihedralangle_restraints.instance_id_1
_pdbx_vrpt_violated_dihedralangle_restraints.instance_id_2
_pdbx_vrpt_violated_dihedralangle_restraints.instance_id_3
_pdbx_vrpt_violated_dihedralangle_restraints.instance_id_4
_pdbx_vrpt_violated_dihedralangle_restraints.rest_id
_pdbx_vrpt_violated_dihedralangle_restraints.rlist_id
_pdbx_vrpt_violated_dihedralangle_restraints.violation
pdbx_vrpt_distance_violations_ensemble_summary
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3
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_pdbx_vrpt_distance_violations_ensemble_summary.id
_pdbx_vrpt_distance_violations_ensemble_summary.fraction_of_ensemble_count
_pdbx_vrpt_distance_violations_ensemble_summary.fraction_of_ensemble_percent
pdbx_vrpt_distance_violation_ensemble
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4
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_pdbx_vrpt_distance_violation_ensemble.ordinal
_pdbx_vrpt_distance_violation_ensemble.dist_rest_type
_pdbx_vrpt_distance_violation_ensemble.ensemble_distance_count
_pdbx_vrpt_distance_violation_ensemble.violations_count
pdbx_vrpt_dihedralangle_violations_summary
Items
10
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_pdbx_vrpt_dihedralangle_violations_summary.ordinal
_pdbx_vrpt_dihedralangle_violations_summary.consistently_violated_count
_pdbx_vrpt_dihedralangle_violations_summary.consistently_violated_percent_total
_pdbx_vrpt_dihedralangle_violations_summary.consistently_violated_percent_type
_pdbx_vrpt_dihedralangle_violations_summary.percent_total
_pdbx_vrpt_dihedralangle_violations_summary.restraint_type
_pdbx_vrpt_dihedralangle_violations_summary.restraints_count
_pdbx_vrpt_dihedralangle_violations_summary.violated_count
_pdbx_vrpt_dihedralangle_violations_summary.violated_percent_total
_pdbx_vrpt_dihedralangle_violations_summary.violated_percent_type
pdbx_vrpt_dihedralangle_violation_model_summary
Items
6
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_pdbx_vrpt_dihedralangle_violation_model_summary.ordinal
_pdbx_vrpt_dihedralangle_violation_model_summary.PDB_model_num
_pdbx_vrpt_dihedralangle_violation_model_summary.max_violation
_pdbx_vrpt_dihedralangle_violation_model_summary.mean_violation
_pdbx_vrpt_dihedralangle_violation_model_summary.median_violation
_pdbx_vrpt_dihedralangle_violation_model_summary.standard_deviation
pdbx_vrpt_dihedralangle_violation_model
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4
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_pdbx_vrpt_dihedralangle_violation_model.ordinal
_pdbx_vrpt_dihedralangle_violation_model.PDB_model_num
_pdbx_vrpt_dihedralangle_violation_model.ang_rest_type
_pdbx_vrpt_dihedralangle_violation_model.violations_count
pdbx_vrpt_dihedralangle_violation_ensemble_summary
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3
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_pdbx_vrpt_dihedralangle_violation_ensemble_summary.id
_pdbx_vrpt_dihedralangle_violation_ensemble_summary.fraction_of_ensemble_count
_pdbx_vrpt_dihedralangle_violation_ensemble_summary.fraction_of_ensemble_percent
pdbx_vrpt_dihedralangle_ensemble_violation
Items
4
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_pdbx_vrpt_dihedralangle_ensemble_violation.ordinal
_pdbx_vrpt_dihedralangle_ensemble_violation.ang_rest_type
_pdbx_vrpt_dihedralangle_ensemble_violation.ensemble_dihedral_count
_pdbx_vrpt_dihedralangle_ensemble_violation.violations_count
pdbx_vrpt_residual_distance_violations
Items
4
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_pdbx_vrpt_residual_distance_violations.ordinal
_pdbx_vrpt_residual_distance_violations.bins
_pdbx_vrpt_residual_distance_violations.max_violation
_pdbx_vrpt_residual_distance_violations.violations_per_model
pdbx_vrpt_most_violated_distance_restraints
Items
25
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_pdbx_vrpt_most_violated_distance_restraints.ordinal
_pdbx_vrpt_most_violated_distance_restraints.altcode_1
_pdbx_vrpt_most_violated_distance_restraints.altcode_2
_pdbx_vrpt_most_violated_distance_restraints.atom_1
_pdbx_vrpt_most_violated_distance_restraints.atom_2
_pdbx_vrpt_most_violated_distance_restraints.chain_1
_pdbx_vrpt_most_violated_distance_restraints.chain_2
_pdbx_vrpt_most_violated_distance_restraints.ent_1
_pdbx_vrpt_most_violated_distance_restraints.ent_2
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