PDBx/mmCIF
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Data Category ma_alignment

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General

Category name
ma_alignment
Required in PDB entries
no
Category group membership
ma_group
Used in current PDB entries
No

Category Relationship Diagrams

70
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Category Description 

               Data items in the MA_ALIGMNENT category record details about
               the relationship between the sequences of the target and the 
               structural template obtained through multiple sequence alignment
               methods. Alignments can be fully gapped or partial.

Category Example

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  loop_ 
  _ma_alignment.ordinal_id
  _ma_alignment.alignment_id
  _ma_alignment.target_template_flag
  _ma_alignment.sequence
1  1  1  

GAGFGDLKSPAGLQVLNDYLA----DKSYIEGYVPSQADVAVFEAVSSP------PPADLCHALRWYNHIKSYEKEKAS
LPGVKKALGKYGPADVEDTT

2  1  2  

--GFGDLKSPAGLQVLNDYLA----DKSYIEGYVPSQADVAVFEAVSSP------PPADLCHALRWYNHIKSYEKEKAS
LPGVKKALGKYGPADVEDTT

3  1  2  

----------PGHLKPFETLLSQNQGGKAFIVGDQISFADYNLLDLLLIHQVLAPGCLDNFPLLSAYVARLSARPKIKAF
LSS-----------------

    # ... abbreviated ... #

Key Data Items

Category Data Items

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