Data Category ihm_external_files
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General 
- Category name
- ihm_external_files
- Required in PDB entries
- no
- Category group membership
- ihm_group
- Used in current PDB entries
- No
Category Relationship Diagrams 
View full category relationship diagram including all dictionary data categories
Category Description
Category provides details regarding external files. The IHM_EXTERNAL_REFERENCE_INFO category captures the top-level details regarding external data sources. This category captures the specific details regarding externally stored files related to the particular I/H model entry.
Category Example1
loop_
_ihm_external_files.id
_ihm_external_files.reference_id
_ihm_external_files.file_path
_ihm_external_files.file_format
_ihm_external_files.content_type
_ihm_external_files.file_size_bytes
_ihm_external_files.details
1 1 'integrativemodeling-nup84-a69f895/data/EDC_XL_122013.new.dat' 'TXT' 'Input data or restraints' . 'EDC crosslinks file'
2 1 'integrativemodeling-nup84-a69f895/data/yeast_Nup84_DSS.new.dat' 'TXT' 'Input data or restraints' . 'DSS crosslinks file'
3 1 'integrativemodeling-nup84-a69f895/data/nup84_kinked_from_class2.pgm' 'PGM' 'Input data or restraints' . 'Nup84 2DEM class average'
4 1 'integrativemodeling-nup84-a69f895/data/nup84_kinked_from_class2.mrc' 'MRC' 'Input data or restraints' . 'Nup84 2DEM class average'
5 1 'integrativemodeling-nup84-a69f895/data/ScSec13_2-296_new2.pdb' 'PDB' 'Input data or restraints' . 'Sec13 starting comparative model'
6 1 'integrativemodeling-nup84-a69f895/scripts/MODELLER_scripts/Nup84/all_align_final2.ali' 'PIR/NBRF' 'Input data or restraints' . 'Nup84 multiple sequence alignment file'
7 1 'integrativemodeling-nup84-a69f895/scripts/MODELLER_scripts/Nup84/all_align_final1.ali' 'PIR/NBRF' 'Input data or restraints' . 'Nup84 multiple sequence alignment file'
8 1 'integrativemodeling-nup84-a69f895/scripts/nup84.isd.modeling.py' 'Other' 'Modeling workflow or script' . 'Python integrative modeling main script'
9 1 'integrativemodeling-nup84-a69f895/scripts/nup84.topology.py' 'Other' 'Modeling workflow or script' . 'Python script for constructing subunits'
10 1 'integrativemodeling-nup84-a69f895/scripts/nup84.merge.py' 'Other' 'Modeling workflow or script' . 'Python script to merge output files'
11 1 'integrativemodeling-nup84-a69f895/scripts/README' 'TXT' 'Modeling workflow or script' . 'Readme file'
12 1 'integrativemodeling-nup84-a69f895/outputs/localization/cluster1/nup84.mrc' 'MRC' 'Modeling or post-processing output' . 'Nup84 localization density file'
13 1 'integrativemodeling-nup84-a69f895/outputs/localization/cluster1/nup85.mrc' 'MRC' 'Modeling or post-processing output' . 'Nup85 localization density file'
14 1 'integrativemodeling-nup84-a69f895/outputs/localization/cluster1/nup120.mrc' 'MRC' 'Modeling or post-processing output' . 'Nup120 localization density file'
# ... abbreviated ...
Category Example2
loop_
_ihm_external_files.id
_ihm_external_files.reference_id
_ihm_external_files.file_path
_ihm_external_files.file_format
_ihm_external_files.content_type
_ihm_external_files.file_size_bytes
_ihm_external_files.details
1 2 'data/EDC_XL_122013.dat' 'TXT' 'Input data or restraints' . 'EDC crosslinks file'
2 2 'data/yeast_Nup84_DSS.dat' 'TXT' 'Input data or restraints' . 'DSS crosslinks file'
3 2 'nup145.mrc' 'MRC' 'Modeling or post-processing output' . 'Nup145 localization density file'
# ... abbreviated ...
Category Example3
loop_
_ihm_external_files.id
_ihm_external_files.reference_id
_ihm_external_files.file_path
_ihm_external_files.content_type
_ihm_external_files.details
1 3 . 'Input data or restraints' 'Raw micrographs from which the class average was derived'
# ... abbreviated ...
