Data Item _ma_protocol_step.method_type
Browse:
General 
- Item name
- _ma_protocol_step.method_type
- Category name
- ma_protocol_step
- Attribute name
- method_type
- Required in PDB entries
- yes
- Used in current PDB entries
- No
Item Description
The method type that was applied in this protocol step.
Data Type 
- Data type code
- line
- Data type detail
- char item types / multi-word items ...
- Primitive data type code
- char
- Regular expression
- [][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*
Controlled Vocabulary
| Allowed Value | Details |
|---|---|
| backbone generation | generation of backbone coordinates for protein design |
| coevolution MSA | generation of multiple sequence alignment used for modeling (commonly used to extract coevolution signals explicitly or implicitly) |
| contact prediction | contact prediction |
| energy estimate | energy estimate |
| experimental validation | experimental validation |
| model quality assessment | model quality assessment |
| model refinement | model refinement |
| model selection | selection of model(s) out of several generated models |
| modeling | generation of model coordinates (can be only step for end-to-end modeling methods) |
| other | other type of step |
| sequence design | generation of sequences for protein design (incl. inverse folding) |
| structure validation | assessing designed sequences with their modeled structures |
| target-template alignment | target-template alignment |
| template search | search for template or input structures |
| template selection | selection of template(s) out of several found templates |
Controlled Vocabulary at Deposition
| Allowed Value | Details |
|---|---|
| backbone generation | generation of backbone coordinates for protein design |
| coevolution MSA | generation of multiple sequence alignment used for modeling (commonly used to extract coevolution signals explicitly or implicitly) |
| contact prediction | contact prediction |
| energy estimate | energy estimate |
| experimental validation | experimental validation |
| model quality assessment | model quality assessment |
| model refinement | model refinement |
| model selection | selection of model(s) out of several generated models |
| modeling | generation of model coordinates (can be only step for end-to-end modeling methods) |
| other | other type of step |
| sequence design | generation of sequences for protein design (incl. inverse folding) |
| structure validation | assessing designed sequences with their modeled structures |
| target-template alignment | target-template alignment |
| template search | search for template or input structures |
| template selection | selection of template(s) out of several found templates |