Data Item _em_software.name
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General 
- Item name
- _em_software.name
- Category name
- em_software
- Attribute name
- name
- Required in PDB entries
- no
- Used in current PDB entries
- Yes, in about 5.8 % of entries
Item Description
The name of the software package used, e.g., RELION. Depositors are strongly
encouraged to provide a value in this field.
Item Example1
EMAN
Item Example2
Imagic
Item Example3
Spider
Item Example4
Bsoft
Item Example5
UCSF-Chimera
Data Type 
- Data type code
- line
- Data type detail
- char item types / multi-word items ...
- Primitive data type code
- char
- Regular expression
- [][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*
Controlled Vocabulary at Deposition
| Allowed Value | Details |
|---|---|
| 3dmod | |
| ADP_EM | |
| AIMLESS | |
| ARP/wARP | |
| ASTRA-TOOLBOX | |
| AV3 | |
| Amber | |
| AmiraFPM | |
| Appion | |
| Auto3DEM | |
| BUSTER | |
| Bsoft | |
| Buccaneer | |
| Build_Fspace | |
| CCP4 package | |
| CNS | |
| CTFFIND | |
| CTFPHASEFLIP | |
| CTFTILT | |
| Confidence Maps | |
| Coot | |
| Cow | |
| DE-IM | |
| DIALS | |
| DigitalMicrograph | |
| DireX | |
| DoG Picker | |
| DockEM | |
| Dynamo | |
| EM-Menu | |
| EM-Tools | |
| EM3DR | |
| EMAN | |
| EMAN2 | |
| EMIRA | |
| EMPFT | |
| EMReady | |
| EMfit | |
| EPU | |
| ERRASER | |
| ETHAN | |
| FEI tomography | |
| FOCUS | |
| FREALIGN | |
| FREALIX | |
| FindEM | |
| FitCTF2 | |
| Flex-EM | |
| Gautomatch | |
| Gctf | |
| Gorgon | |
| HADDOCK | |
| HARUSPEX | |
| I-TASSER | |
| I3 | |
| ICON | |
| IHRSR | |
| IMAGIC | |
| IMIRS | |
| IMOD | |
| IMP | |
| IPET | |
| IPLT | |
| ISOLDE | |
| J3DR | |
| JADAS | |
| JALIGN | |
| JSUBTOMO | |
| LAFTER | |
| LIBG | |
| Latitude | |
| Leginon | |
| M | |
| MATLAB | |
| MDFF | |
| MODELLER | |
| MOLREP | |
| MPSA | |
| MRC IMAGE PROCESSING PACKAGE | |
| MotionCorr2 | |
| NAMD | |
| NOVACTF | |
| O | |
| PACEtomo | |
| PEET | |
| PHENIX | |
| POINTLESS | |
| PRIISM/IVE | |
| PRIME | |
| PROTOMO | |
| Panta Rhei | |
| Pathwalking | |
| PowerFit | |
| PyMOL | |
| PyTo | |
| PyTom | |
| RAPTOR | |
| REFMAC | |
| RELION | |
| RSRef | |
| Refine_Fspace | |
| ResMap | |
| RobEM | |
| Rosetta | |
| RosettaEM | |
| Ruby-Helix | |
| SHELXD | |
| SIMPLE | |
| SPARX | |
| SPHIRE | |
| SPIDER | |
| SPRING | |
| STOPGAP | |
| SUPER | |
| Scipion | |
| Sculptor | |
| SerialEM | |
| Servalcat | |
| Signature | |
| Situs | |
| Super-sampling SART | |
| TEMPy | |
| TOM | |
| TOM Toolbox | |
| TOMO3D | |
| TOMOCTF | |
| TomoAlign | |
| Topaz | |
| UCSF Chimera | |
| UCSF ChimeraX | |
| UCSF Tomography | |
| UCSFImage | |
| UCSFImage4 | |
| URO | |
| VMD | |
| Warp | |
| X-PLOR | |
| X3D | |
| Xmipp | |
| cisTEM | |
| crYOLO | |
| cryoDRGN | |
| cryoDRGN2 | |
| cryoSPARC | |
| ctfit | |
| eTasED | |
| eTomo | |
| emClarity | |
| hsearch_lorentz | |
| iMODFIT | |
| jspr | |
| novaSTA | |
| subTOM |
Related Items 
| Related Item Name | Relation Type |
|---|---|
| _em_2d_projection_selection.software_name | replaces |
| _em_3d_reconstruction.software | replaces |
| _em_3d_fitting.software_name | replaces |