Residue varinats default to the pH 7 forms, specifically protonated LYS, ARG, HIS, and N-terminus
and deprotonated ASP, GLU, CYS, and C-terminus. 'deprotonated' CYS is generally assumed to be the 
disulfide form. Where given the RCSB variant code is used. There is no decision on what to use where 
these codes are not defined.