Data Item _ihm_cross_link_list.linker_type
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General 
- Item name
- _ihm_cross_link_list.linker_type
- Category name
- ihm_cross_link_list
- Attribute name
- linker_type
- Required in PDB entries
- yes
- Used in currrent PDB entries
- No
Item Description
The type of crosslinker used.
Data Type 
- Data type code
- line
- Data type detail
- char item types / multi-word items ...
- Primitive data type code
- char
- Regular expression
- [][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*
Controlled Vocabulary
| Allowed Value | Details |
|---|---|
| ADH | (1Z,6Z)-Hexanedihydrazonic acid |
| BMSO | bismaleimide sulfoxide crosslinker |
| BS2G | Bis-(sulfosuccinimidyl) glutarate crosslinker |
| BS3 | bis(sulfosuccinimidyl) suberate crosslinker |
| BSP | Bis(succinimidyl) penta(ethylene glycol) crosslinker |
| BrEtY | O-(2-bromoethyl)-tyrosine (non-canonical amino acid) |
| BrdU | 5-bromo-2'-deoxyuridine |
| CDI | 1,1'-carbonyldiimidazole |
| CYS | Cysteine crosslinker |
| DHSO | dihydrazide sulfoxide crosslinker |
| DMTMM | 4-(4,6-Dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium chloride crosslinker |
| DSA | DiSuccinimidyl Adipate |
| DSBU | Disuccinimidyl dibutyric urea |
| DSG | disuccinimidyl glutarate crosslinker |
| DSPP | Disuccinimidyl phenyl phosphonic acid or PhoX |
| DSS | disuccinimidyl suberate (DSS) crosslinker |
| DSSO | disuccinimidyl sulfoxide (DSSO) crosslinker |
| DST | disuccinimidyl tartrate crosslinker |
| EDC | 1-ethyl-(dimethylaminopropyl) carbodiimide hydrochloride (EDC) crosslinker |
| EGS | ethylene glycol bis(succinimidyl succinate) crosslinker |
| KArGO | arginine-lysine hetero-bifunctional aromatic glyoxal crosslinker |
| L-Photo-Leucine | L-Photo-Leucine crosslinker |
| LCSDA | succinimidyl 6-(4,4'-azipentanamido)hexanoate |
| Other | Other type of crosslinker |
| PDH | pimelic acid dihydrazide crosslinker |
| SDA | succinimidyl 4,4'-azipentanoate |
| TBDSPP | tert-butyl disuccinimidyl phenyl phosphonate or tBu-PhoX |
| sulfo-SDA | sulfosuccinimidyl 4,4'-azipentanoate, heterobifunctional crosslinker |
| sulfo-SMCC | sulfosuccinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate crosslinker |
Controlled Vocabulary at Deposition
| Allowed Value | Details |
|---|---|
| ADH | (1Z,6Z)-Hexanedihydrazonic acid |
| BMSO | bismaleimide sulfoxide crosslinker |
| BS2G | Bis-(sulfosuccinimidyl) glutarate crosslinker |
| BS3 | bis(sulfosuccinimidyl) suberate crosslinker |
| BSP | Bis(succinimidyl) penta(ethylene glycol) crosslinker |
| BrEtY | O-(2-bromoethyl)-tyrosine (non-canonical amino acid) |
| BrdU | 5-bromo-2'-deoxyuridine |
| CDI | 1,1'-carbonyldiimidazole |
| CYS | Cysteine crosslinker |
| DHSO | dihydrazide sulfoxide crosslinker |
| DMTMM | 4-(4,6-Dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium chloride crosslinker |
| DSA | DiSuccinimidyl Adipate |
| DSBU | Disuccinimidyl dibutyric urea |
| DSG | disuccinimidyl glutarate crosslinker |
| DSPP | Disuccinimidyl phenyl phosphonic acid or PhoX |
| DSS | disuccinimidyl suberate (DSS) crosslinker |
| DSSO | disuccinimidyl sulfoxide (DSSO) crosslinker |
| DST | disuccinimidyl tartrate crosslinker |
| EDC | 1-ethyl-(dimethylaminopropyl) carbodiimide hydrochloride (EDC) crosslinker |
| EGS | ethylene glycol bis(succinimidyl succinate) crosslinker |
| KArGO | arginine-lysine hetero-bifunctional aromatic glyoxal crosslinker |
| L-Photo-Leucine | L-Photo-Leucine crosslinker |
| LCSDA | succinimidyl 6-(4,4'-azipentanamido)hexanoate |
| Other | Other type of crosslinker |
| PDH | pimelic acid dihydrazide crosslinker |
| SDA | succinimidyl 4,4'-azipentanoate |
| TBDSPP | tert-butyl disuccinimidyl phenyl phosphonate or tBu-PhoX |
| sulfo-SDA | sulfosuccinimidyl 4,4'-azipentanoate, heterobifunctional crosslinker |
| sulfo-SMCC | sulfosuccinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate crosslinker |