Data Category pdbx_validate_peptide_omega

General

Category name
pdbx_validate_peptide_omega
Required in PDB entries
no
Category group membership
pdbx_group  validate_group
Used in current PDB entries
Yes, in about 12.2 % of entries

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories
70
View abbreviated category relationship diagram including only those categories used in current PDB entries.

Category Description

    Data items in the PDBX_VALIDATE_PEPTIDE_OMEGA category list the
    residues that contain peptide bonds deviate 
    significantly from both cis and trans conformation.  
    cis bonds, if any, are listed on cispep records.  
    trans is defined as 180 +/- 30 and
    cis is defined as 0 +/- 30 degrees.

Category Example

 
loop_
_pdbx_validate_peptide_omega.id
_pdbx_validate_peptide_omega.PDB_model_num
_pdbx_validate_peptide_omega.auth_comp_id_1
_pdbx_validate_peptide_omega.auth_asym_id_1
_pdbx_validate_peptide_omega.auth_seq_id_1
_pdbx_validate_peptide_omega.PDB_ins_code_1
_pdbx_validate_peptide_omega.label_alt_id_1
_pdbx_validate_peptide_omega.auth_comp_id_2
_pdbx_validate_peptide_omega.auth_asym_id_2
_pdbx_validate_peptide_omega.auth_seq_id_2
_pdbx_validate_peptide_omega.PDB_ins_code_2
_pdbx_validate_peptide_omega.label_alt_id_2
_pdbx_validate_peptide_omega.omega
   1    0 A ASP  414 . .  A ARG  413 . .     147.84
   2    0 B ASN  289 . .  B ALA  288 . .     -39.12