Data Category pdbx_entity_src_gen_depositor_info

General

Category name
pdbx_entity_src_gen_depositor_info
Required in PDB entries
no
Category group membership
entity_group
Used in current PDB entries
No

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories

Category Description

               Data items in the PDBX_ENTITY_SRC_GEN_DEPOSITOR_INFO category record details of
               the source from which the entity was obtained in cases
               where the source was genetically manipulated.  The
               following are treated separately:  items pertaining to the tissue
               from which the gene was obtained, items pertaining to the host
               organism for gene expression and items pertaining to the actual
               producing organism (plasmid).

Category Example

 
    loop_
    _pdbx_entity_src_gen_depositor_info.src_id
    _pdbx_entity_src_gen_depositor_info.entity_id
    _pdbx_entity_src_gen_depositor_info.beg_seq_num
    _pdbx_entity_src_gen_depositor_info.end_seq_num
    _pdbx_entity_src_gen_depositor_info.gene_src_scientific_name
    _pdbx_entity_src_gen_depositor_info.gene_src_gene 
    _pdbx_entity_src_gen_depositor_info.gene_src_ncbi_taxonomy_id    
    _pdbx_entity_src_gen_depositor_info.host_org_scientific_name
    _pdbx_entity_src_gen_depositor_info.host_org_ncbi_taxonomy_id 
    _pdbx_entity_src_gen_depositor_info.host_org_strain
    _pdbx_entity_src_gen_depositor_info.host_org_vector_type    
    _pdbx_entity_src_gen_depositor_info.plasmid_name
    1 1  1   364 'Escherichia coli'    'b4034, JW3994'   83333  'Escherichia coli' 562 ? plasmid pGEX6p-2RBS 
    2 1  365 370 'synthetic construct'  ?                32630  'Escherichia coli' 562 ? plasmid pGEX6p-2RBS  
    3 1  371 529 'Homo sapiens'        'malE, PTHR1'     9606   'Escherichia coli' 562 ? plasmid pGEX6p-2RBS 
    4 1  530 535 'synthetic construct'  ?                32630  'Escherichia coli' 562 ? plasmid pGEX6p-2RBS