SECONDARY STRUCTURE

PDBx/mmCIF category Legacy PDB format records Description
_struct_conf_type HELIX Type of the conformation of the backbone of the polymer.

Example:

_struct_conf_type.id HELX_P
PDBx/mmCIF category Legacy PDB format records Description
_struct_conf HELIX Details about the backbone conformation of a segment of polymer.

Example:

loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 SER A 10 ? GLY A 15 ? SER A 10 GLY A 15 1 ? 6
HELX_P HELX_P2 AA2 HIS A 41 ? CYS A 44 ? HIS A 41 CYS A 44 5 ? 4
HELX_P HELX_P3 AA3 GLU A 47 ? ASN A 51 ? GLU A 47 ASN A 51 5 ? 5
HELX_P HELX_P4 AA4 ASN A 53 ? ARG A 60 ? ASN A 53 ARG A 60 1 ? 8
HELX_P HELX_P5 AA5 LYS A 61 ? HIS A 64 ? LYS A 61 HIS A 64 5 ? 4
HELX_P HELX_P6 AA6 ILE A 200 ? ASN A 214 ? ILE A 200 ASN A 214 1 ? 15
HELX_P HELX_P7 AA7 THR A 226 ? TYR A 237 ? THR A 226 TYR A 237 1 ? 12
HELX_P HELX_P8 AA8 THR A 243 ? LEU A 250 ? THR A 243 LEU A 250 1 ? 8
HELX_P HELX_P9 AA9 LEU A 250 ? GLY A 258 ? LEU A 250 GLY A 258 1 ? 9
HELX_P HELX_P10 AB1 ALA A 260 ? GLY A 275 ? ALA A 260 GLY A 275 1 ? 16
HELX_P HELX_P11 AB2 THR A 292 ? SER A 301 ? THR A 292 SER A 301 1 ? 10
PDBx/mmCIF category Legacy PDB format records Description
_struct_sheet SHEET Details about the beta sheets.

Example:

loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 7 ?
AA2 ? 5 ?
AA3 ? 3 ?
PDBx/mmCIF category Legacy PDB format records Description
_struct_sheet_order SHEET Details about the order of the residue ranges that form a beta-sheet. All order links are pairwise and the specified pairs are assumed to be adjacent to one another in the sheet.

Example:

loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA1 4 5 ? anti-parallel
AA1 5 6 ? anti-parallel
AA1 6 7 ? anti-parallel
AA2 1 2 ? parallel
AA2 2 3 ? anti-parallel
AA2 3 4 ? anti-parallel
AA2 4 5 ? anti-parallel
AA3 1 2 ? parallel
AA3 2 3 ? anti-parallel
PDBx/mmCIF category Legacy PDB format records Description
_struct_sheet_range SHEET Details about the residue ranges that form a beta-sheet. Residues are included in a range if they make beta-sheet-type hydrogen-bonding interactions with at least one adjacent strand and if there are at least two residues in the range.

Example:

loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 VAL A 73 ? LEU A 75 ? VAL A 73 LEU A 75
AA1 2 PHE A 66 ? ALA A 70 ? PHE A 66 ALA A 70
AA1 3 MET A 17 ? CYS A 22 ? MET A 17 CYS A 22
AA1 4 THR A 25 ? LEU A 32 ? THR A 25 LEU A 32
AA1 5 VAL A 35 ? PRO A 39 ? VAL A 35 PRO A 39
AA1 6 VAL A 86 ? VAL A 91 ? VAL A 86 VAL A 91
AA1 7 VAL A 77 ? GLN A 83 ? VAL A 77 GLN A 83
AA2 1 LYS A 100 ? PHE A 103 ? LYS A 100 PHE A 103
AA2 2 CYS A 156 ? GLU A 166 ? CYS A 156 GLU A 166
AA2 3 VAL A 148 ? ASP A 153 ? VAL A 148 ASP A 153
AA2 4 THR A 111 ? TYR A 118 ? THR A 111 TYR A 118
AA2 5 SER A 121 ? ALA A 129 ? SER A 121 ALA A 129
AA3 1 LYS A 100 ? PHE A 103 ? LYS A 100 PHE A 103
AA3 2 CYS A 156 ? GLU A 166 ? CYS A 156 GLU A 166
AA3 3 HIS A 172 ? THR A 175 ? HIS A 172 THR A 175
PDBx/mmCIF category Legacy PDB format records Description
_pdbx_struct_sheet_hbond SHEET Details about the hydrogen bonding between residue ranges in a beta sheet.

Example:

loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 O LEU A 75 ? O LEU A 75 N VAL A 68 ? N VAL A 68
AA1 2 3 O LEU A 67 ? O LEU A 67 N THR A 21 ? N THR A 21
AA1 3 4 N VAL A 20 ? N VAL A 20 O LEU A 27 ? O LEU A 27
AA1 4 5 N LEU A 30 ? N LEU A 30 O TYR A 37 ? O TYR A 37
AA1 5 6 N CYS A 38 ? N CYS A 38 O LEU A 87 ? O LEU A 87
AA1 6 7 O LYS A 90 ? O LYS A 90 N ILE A 78 ? N ILE A 78
AA2 1 2 N LYS A 100 ? N LYS A 100 O VAL A 157 ? O VAL A 157
AA2 2 3 O SER A 158 ? O SER A 158 N ASN A 151 ? N ASN A 151
AA2 3 4 O PHE A 150 ? O PHE A 150 N SER A 113 ? N SER A 113
AA2 4 5 N ALA A 116 ? N ALA A 116 O SER A 123 ? O SER A 123
AA3 1 2 N LYS A 100 ? N LYS A 100 O VAL A 157 ? O VAL A 157
AA3 2 3 N MET A 165 ? N MET A 165 O ALA A 173 ? O ALA A 173