Data Item _emd_software.name

General

Item name
_emd_software.name
Category name
emd_software
Attribute name
name
Required in PDB entries
no
Used in currrent PDB entries
No

Item Description

The name of the software package used, e.g., RELION. Depositors are strongly encouraged to provide a value in this field.
 EMAN
 Imagic
 Spider
 Bsoft
 UCSF-Chimera

Data Type

Data type code
line
Data type detail
char item types / multi-word items ...
Primitive data type code
char
Regular expression
[][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*

Controlled Vocabulary at Deposition

Allowed Value Details
3dmod
ADP_EM
AIMLESS
AV3
Amber
AmiraFPM
Appion
Auto3DEM
BUSTER
Bsoft
Buccaneer
Build_Fspace
CCP4 package
CNS
CTFFIND
CTFPHASEFLIP
CTFTILT
Coot
Cow
DE-IM
DigitalMicrograph
DireX
DoG Picker
Dynamo
EM-Menu
EM-Tools
EM3DR
EMAN
EMAN2
EMPFT
EMfit
EPU
ERRASER
ETHAN
FOCUS
FREALIGN
FREALIX
FindEM
FitCTF2
Flex-EM
Gautomatch
Gctf
Gorgon
HADDOCK
I-TASSER
ICON
IHRSR
IMAGIC
IMIRS
IMOD
IMP
ISOLDE
J3DR
JALIGN
JSUBTOMO
LIBG
Latitude
Leginon
MATLAB
MDFF
MODELLER
MOLREP
MPSA
MRC IMAGE PROCESSING PACKAGE
MotionCorr2
NAMD
NOVACTF
O
PEET
PHENIX
POINTLESS
PRIISM/IVE
PRIME
PROTOMO
Pathwalking
PowerFit
PyMOL
PyTom
RAPTOR
REFMAC
RELION
RSRef
Refine_Fspace
ResMap
RobEM
Rosetta
RosettaEM
Ruby-Helix
SHELXD
SIMPLE
SPARX
SPHIRE
SPIDER
SPRING
SUPER
Scipion
Sculptor
SerialEM
Signature
Situs
Super-sampling SART
TEMPy
TOM
TOM Toolbox
TOMO3D
TOMOCTF
Topaz
UCSF Chimera
UCSF Tomography
UCSFImage
UCSFImage4
URO
VMD
Warp
X-PLOR
X3D
Xmipp
cisTEM
cryoSPARC
ctfit
eTomo
emClarity
hsearch_lorentz
iMODFIT
jspr