Data Item _ndb_struct_ntc_step_summary.assigned_NtC

General

Item name
_ndb_struct_ntc_step_summary.assigned_NtC
Category name
ndb_struct_ntc_step_summary
Attribute name
assigned_NtC
Required in PDB entries
yes
Used in currrent PDB entries
No

Item Description

The assigned NtC for the nucleotide step.

Data Type

Data type code
code
Data type detail
code item types/single words ...
Primitive data type code
char
Regular expression
[][_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*

Controlled Vocabulary

Allowed Value Details
AA00 the most frequent, canonical A form
AA01 A like, 2/2 switch (150/180)
AA02 A-DNA with the B like 1/2
AA03 A like, similar to AA00, high 2
AA04 A like, similar to AA00, low 2
AA05 A like, 2/2 switch (130/180)
AA06 A like, 2/2 switch (130/180)
AA07 A form with distant bases, low 1
AA08 A form variant
AA09 A form variant
AA10 A like, 2/2 switch (210/140)
AA11 A like, 2/2 switch (90/190)
AA12 A like backbone, bases can be intercalated
AA13 A form with distant bases, low 1
AAS1 A like with first base in syn orientation
AB01 A-B: 1 C3'-endo, 2 C2'-endo, 1/2 have A-B pattern
AB02 A-B: 1 O4'-endo, extremely low 1, 1/2 are B like
AB03 A-B: similar to AB01 with high 2 and low 1, 2, 2
AB04 A-B: 1 C3'-endo, 2 C2'-endo, 1/2 have A/B pattern, C'C' high
AB05 A-B: 1 C3'-endo, 2 C2'-endo, 1/2 have A/B pattern
AB1S A-B, 2 syn
AB2S A-B, 2 syn
BA01 BI-A complex conformer with 2 from C3' to C4'-exo, 1/2 are B like
BA05 BI-A complex conformer with 2 from C3' to C4'-exo, 1/2 are B like
BA08 B-A: low 2
BA09 BI-A: extremely low 2~60, 2/2 switch (260/170), 2 A like
BA10 B-A complex cluster: 2~90, 2~180, 2 A like
BA13 B-A complex cluster: 2~90, 2~180, 2 A like
BA16 BII-A: 2 A like
BA17 BII-A: 2~O4'-endo, 2~130
BB00 the most frequent DNA conformer, canonical B form, also called BI
BB01 less populated variant of BI form
BB02 BI with 2/2 typical values switched to 30/300
BB03 BI with 2/2 typical values switched to 160/170
BB04 conformer with torsion transforming BI to BII form
BB05 BI-BII with 2/2 typical values switched to 70/220, 2 A like
BB07 BII form, typical by 1/1 switch compared to BI
BB08 BII form variant with 1/1 typical values switched to 70/210
BB10 B form with extremely low values of 2, 2, 2, and low 1 and 1
BB11 B form with 2/2 typical values switched to 120/190 and low both 1 and 1
BB12 BI like with 2/2 typical values switched to 260/170, low 2 70, 2 A like
BB13 BI like with 2/2 typical values switched to 220/160, low 2 70, 2 A like
BB14 B like with extremely low 1, high 2
BB15 BI with high 2 (340) and 2 near 0
BB16 B like, with 1 A like
BB17 less populated variant of BI form, very low 1, 2, 2
BB1S BI like, unusual 2 and 2, 2 syn
BB20 B like pucker, 2 A like, unusual combination of 1, 1, 2, 2, 2
BB2S BI like, 2 50, 2 290, 2 syn
BBS1 BI like, 1 syn
IC01 A-B backbone, parallel distant bases can be intercalated
IC02 A-B backbone, parallel distant bases can be intercalated
IC03 A-B backbone, parallel distant bases can be intercalated, 2/2 typical values switched to 70/300, 2 B like
IC04 A-B backbone, parallel distant bases can be intercalated, 2/2 typical values switched to 190/180, 2 B like
IC05 BII backbone, parallel distant bases can be intercalated
IC06 B like, parallel distant bases can be intercalated, 1 A like
IC07 A like intercalated
NANT Unassigned conformations
OP01 A pucker and torsions, unusual combination of backbone torsions, bases distant, parallel, low rise
OP02 A pucker and torsions, unusual combination of backbone torsions, bases distant, angled
OP03 A pucker and torsions, unusual combination of backbone torsions, base sangled, can be intercalated
OP04 A pucker and torsions, unusual combination of backbone torsions, base sangled, can be intercalated
OP05 A pucker and torsions, unusual combination of backbone torsions, bases distant, perpendicular
OP06 A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, low rise
OP07 A pucker and torsions, unusual combination of 1, 1, 2, 2, low rise
OP08 A pucker and torsions, unusual combination of 1, 1, 2, 2, bases parallel, low rise
OP09 A-B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP10 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, parallel
OP11 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, perpendicular
OP12 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP13 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, perpendicular
OP14 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP15 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases can pair with each other
OP16 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, perpendicular
OP17 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP18 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP19 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant
OP1S B pucker, unusual combination of 1, 1, 2, 2, bases angled, second syn
OP20 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant in 4-way junction
OP21 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant in 5'-end dsDNA
OP22 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant angled
OP23 B like open, parallel bases
OP24 B like open, low 2, perpendicular bases
OP25 B-A open, perpendicular bases
OP26 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases can pair with each other
OP27 B-A pucker, A like torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP28 A-B pucker, A like torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP29 A pucker and torsions, unusual combination of backbone torsions, bases distant
OP30 A pucker and torsions, unusual combination of backbone torsions, bases distant, parallel
OP31 A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant angled
OPS1 B-A pucker, unusual combination of 1, 1, 2, 2, bases perpendicular, first syn
ZZ01 Z like conformer similar to ZZS2 but both bases anti
ZZ02 Z like conformer similar to ZZ1S with 2/2 typical values switched to 230/60 and both bases anti
ZZ1S Z form, Y-R step
ZZ2S Z form, Y-R step, 2 C2'-endo
ZZS1 ZI form, R-Y step
ZZS2 ZII form, R-Y step

Controlled Vocabulary at Deposition

Allowed Value Details
AA00 the most frequent, canonical A form
AA01 A like, 2/2 switch (150/180)
AA02 A-DNA with the B like 1/2
AA03 A like, similar to AA00, high 2
AA04 A like, similar to AA00, low 2
AA05 A like, 2/2 switch (130/180)
AA06 A like, 2/2 switch (130/180)
AA07 A form with distant bases, low 1
AA08 A form variant
AA09 A form variant
AA10 A like, 2/2 switch (210/140)
AA11 A like, 2/2 switch (90/190)
AA12 A like backbone, bases can be intercalated
AA13 A form with distant bases, low 1
AAS1 A like with first base in syn orientation
AB01 A-B: 1 C3'-endo, 2 C2'-endo, 1/2 have A-B pattern
AB02 A-B: 1 O4'-endo, extremely low 1, 1/2 are B like
AB03 A-B: similar to AB01 with high 2 and low 1, 2, 2
AB04 A-B: 1 C3'-endo, 2 C2'-endo, 1/2 have A/B pattern, C'C' high
AB05 A-B: 1 C3'-endo, 2 C2'-endo, 1/2 have A/B pattern
AB1S A-B, 2 syn
AB2S A-B, 2 syn
BA01 BI-A complex conformer with 2 from C3' to C4'-exo, 1/2 are B like
BA05 BI-A complex conformer with 2 from C3' to C4'-exo, 1/2 are B like
BA08 B-A: low 2
BA09 BI-A: extremely low 2~60, 2/2 switch (260/170), 2 A like
BA10 B-A complex cluster: 2~90, 2~180, 2 A like
BA13 B-A complex cluster: 2~90, 2~180, 2 A like
BA16 BII-A: 2 A like
BA17 BII-A: 2~O4'-endo, 2~130
BB00 the most frequent DNA conformer, canonical B form, also called BI
BB01 less populated variant of BI form
BB02 BI with 2/2 typical values switched to 30/300
BB03 BI with 2/2 typical values switched to 160/170
BB04 conformer with torsion transforming BI to BII form
BB05 BI-BII with 2/2 typical values switched to 70/220, 2 A like
BB07 BII form, typical by 1/1 switch compared to BI
BB08 BII form variant with 1/1 typical values switched to 70/210
BB10 B form with extremely low values of 2, 2, 2, and low 1 and 1
BB11 B form with 2/2 typical values switched to 120/190 and low both 1 and 1
BB12 BI like with 2/2 typical values switched to 260/170, low 2 70, 2 A like
BB13 BI like with 2/2 typical values switched to 220/160, low 2 70, 2 A like
BB14 B like with extremely low 1, high 2
BB15 BI with high 2 (340) and 2 near 0
BB16 B like, with 1 A like
BB17 less populated variant of BI form, very low 1, 2, 2
BB1S BI like, unusual 2 and 2, 2 syn
BB20 B like pucker, 2 A like, unusual combination of 1, 1, 2, 2, 2
BB2S BI like, 2 50, 2 290, 2 syn
BBS1 BI like, 1 syn
IC01 A-B backbone, parallel distant bases can be intercalated
IC02 A-B backbone, parallel distant bases can be intercalated
IC03 A-B backbone, parallel distant bases can be intercalated, 2/2 typical values switched to 70/300, 2 B like
IC04 A-B backbone, parallel distant bases can be intercalated, 2/2 typical values switched to 190/180, 2 B like
IC05 BII backbone, parallel distant bases can be intercalated
IC06 B like, parallel distant bases can be intercalated, 1 A like
IC07 A like intercalated
NANT Unassigned conformations
OP01 A pucker and torsions, unusual combination of backbone torsions, bases distant, parallel, low rise
OP02 A pucker and torsions, unusual combination of backbone torsions, bases distant, angled
OP03 A pucker and torsions, unusual combination of backbone torsions, base sangled, can be intercalated
OP04 A pucker and torsions, unusual combination of backbone torsions, base sangled, can be intercalated
OP05 A pucker and torsions, unusual combination of backbone torsions, bases distant, perpendicular
OP06 A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, low rise
OP07 A pucker and torsions, unusual combination of 1, 1, 2, 2, low rise
OP08 A pucker and torsions, unusual combination of 1, 1, 2, 2, bases parallel, low rise
OP09 A-B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP10 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, parallel
OP11 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, perpendicular
OP12 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP13 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, perpendicular
OP14 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP15 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases can pair with each other
OP16 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, perpendicular
OP17 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP18 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP19 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant
OP1S B pucker, unusual combination of 1, 1, 2, 2, bases angled, second syn
OP20 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant in 4-way junction
OP21 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant in 5'-end dsDNA
OP22 B pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant angled
OP23 B like open, parallel bases
OP24 B like open, low 2, perpendicular bases
OP25 B-A open, perpendicular bases
OP26 B-A pucker and torsions, unusual combination of 1, 1, 2, 2, bases can pair with each other
OP27 B-A pucker, A like torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP28 A-B pucker, A like torsions, unusual combination of 1, 1, 2, 2, bases distant, angled
OP29 A pucker and torsions, unusual combination of backbone torsions, bases distant
OP30 A pucker and torsions, unusual combination of backbone torsions, bases distant, parallel
OP31 A pucker and torsions, unusual combination of 1, 1, 2, 2, bases distant angled
OPS1 B-A pucker, unusual combination of 1, 1, 2, 2, bases perpendicular, first syn
ZZ01 Z like conformer similar to ZZS2 but both bases anti
ZZ02 Z like conformer similar to ZZ1S with 2/2 typical values switched to 230/60 and both bases anti
ZZ1S Z form, Y-R step
ZZ2S Z form, Y-R step, 2 C2'-endo
ZZS1 ZI form, R-Y step
ZZS2 ZII form, R-Y step